Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ERL55_RS04365 Genome accession   NZ_CP035376
Coordinates   961147..961650 (+) Length   167 a.a.
NCBI ID   WP_129135345.1    Uniprot ID   -
Organism   Luteimonas sp. YGD11-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 956147..966650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL55_RS04345 murL 956329..957690 (+) 1362 WP_129135341.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  ERL55_RS04350 murD 957671..959071 (+) 1401 WP_241685833.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ERL55_RS04355 - 959135..959920 (+) 786 WP_129135343.1 dienelactone hydrolase family protein -
  ERL55_RS04360 - 959952..960956 (-) 1005 WP_129135344.1 polyprenyl synthetase family protein -
  ERL55_RS04365 ssb 961147..961650 (+) 504 WP_129135345.1 single-stranded DNA-binding protein Machinery gene
  ERL55_RS04370 - 961812..962348 (+) 537 WP_129135346.1 DUF4019 domain-containing protein -
  ERL55_RS04375 - 962416..963051 (-) 636 WP_129135347.1 hypothetical protein -
  ERL55_RS04380 - 963038..963583 (-) 546 WP_129137198.1 sigma-70 family RNA polymerase sigma factor -
  ERL55_RS04385 - 963699..964754 (+) 1056 WP_129135348.1 sensor domain-containing diguanylate cyclase -
  ERL55_RS04390 - 964764..965726 (-) 963 WP_129135349.1 DMT family transporter -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17911.71 Da        Isoelectric Point: 5.3177

>NTDB_id=339417 ERL55_RS04365 WP_129135345.1 961147..961650(+) (ssb) [Luteimonas sp. YGD11-2]
MARGINKVILVGNLGNDPDVKYTQGGMAVTTISLATSSVRKDKDGNQQERTEWHRVKFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKFTGSDGVEKYFTDIVADEMQMLGGRGEGGGGGGGNYERSSGGGGGGGQRPQRQESGAPRRQAPAQQPQPAMDDF
SDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=339417 ERL55_RS04365 WP_129135345.1 961147..961650(+) (ssb) [Luteimonas sp. YGD11-2]
ATGGCACGCGGAATCAACAAGGTGATCCTGGTCGGCAACCTCGGCAACGATCCCGACGTGAAGTACACCCAGGGCGGCAT
GGCCGTGACCACGATCAGCCTGGCCACGTCGAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAACGCACCGAGTGGC
ACCGGGTGAAGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGCAGCGACGGCGTGGAGAAGTACTTCACCGATATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCGGTGGCAACTACGAGCGCAGCAGCGGCGGCGGTGGTGGCGGTGGGC
AGCGCCCGCAGCGGCAGGAATCCGGCGCGCCGCGTCGCCAGGCCCCGGCCCAGCAGCCGCAGCCGGCGATGGACGACTTC
TCAGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.458

100

0.503
  ssb Neisseria meningitidis MC58

47.727

100

0.503
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.491
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.491

Multiple sequence alignment