Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ERL55_RS01080 Genome accession   NZ_CP035376
Coordinates   228389..229900 (-) Length   503 a.a.
NCBI ID   WP_129134782.1    Uniprot ID   -
Organism   Luteimonas sp. YGD11-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223389..234900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL55_RS01060 - 223438..224229 (+) 792 WP_129134778.1 hypothetical protein -
  ERL55_RS01065 - 224233..225213 (-) 981 WP_129134779.1 LysR family transcriptional regulator -
  ERL55_RS01070 aceB 225309..226919 (+) 1611 WP_129134780.1 malate synthase A -
  ERL55_RS01075 aceA 226957..228249 (+) 1293 WP_129134781.1 isocitrate lyase -
  ERL55_RS01080 comM 228389..229900 (-) 1512 WP_129134782.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ERL55_RS01085 - 229920..230195 (-) 276 WP_129134783.1 accessory factor UbiK family protein -
  ERL55_RS01090 - 230378..230716 (+) 339 WP_129134784.1 P-II family nitrogen regulator -
  ERL55_RS01095 - 230774..231277 (+) 504 WP_129134785.1 hypothetical protein -
  ERL55_RS01100 speE 231333..232187 (-) 855 WP_129134786.1 polyamine aminopropyltransferase -
  ERL55_RS01105 speA 232348..234237 (+) 1890 WP_129134787.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 52868.76 Da        Isoelectric Point: 8.4442

>NTDB_id=339411 ERL55_RS01080 WP_129134782.1 228389..229900(-) (comM) [Luteimonas sp. YGD11-2]
MGLALVHGRARVGVAAPPVQVEVHLGGGLPSMSIVGLPEAAVREAKDRVRAAIQCAQFEFPARRITVNLAPADLPKHGGR
FDLPIALGILAASGQIPLEALHDTEFIGELGLTGELRPVAGALPAALAVAQTGRRLVVPAGNAAEAALAARVDVRAARTL
LEVCAMLHGRATLPAGVAPVAIPASTADMRDVRGQARARRALEIAAAGGHHLLLVGPPGCGKTLLASRLPGLLPEPGDDE
ALEAAAVASVNGGLDPARWRQRPFRAPHHTASAVALAGGGSEPRPGEISLAHRGVLFLDELPEWNRSALEVLREPLESGV
VTISRAARQAEFPARFQLVAAMNPCPCGWAGDTSGRCRCAPDAVRRYRSRISGPLLDRIDLHVEVPRLPAHELRPDAPEG
EASASIRARVEASRALQQARSGRCNAQLDQAATTAHCRLRAAEQQLLERAIESLQLSARAMHRILRVARTIADLDGSADI
LAPHLAEALTYRGFTQEPVAAVA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=339411 ERL55_RS01080 WP_129134782.1 228389..229900(-) (comM) [Luteimonas sp. YGD11-2]
ATGGGACTCGCACTCGTGCATGGACGCGCGCGTGTCGGGGTTGCAGCACCACCGGTCCAGGTGGAAGTGCACCTCGGCGG
TGGCCTGCCGTCGATGTCGATCGTCGGCCTGCCGGAAGCCGCGGTACGCGAGGCCAAGGACCGGGTGCGCGCCGCAATCC
AGTGCGCGCAGTTCGAATTCCCCGCGCGCCGCATCACCGTCAACCTCGCCCCGGCGGACCTTCCGAAGCACGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTTGCCGCCAGCGGTCAGATCCCGCTGGAGGCACTGCACGATACCGAATTCAT
CGGCGAGCTCGGCCTGACCGGCGAATTGCGCCCGGTGGCCGGCGCGCTGCCCGCCGCGCTCGCGGTGGCGCAGACCGGGC
GCCGCCTGGTGGTGCCGGCCGGGAATGCCGCCGAGGCCGCTCTCGCCGCACGGGTGGACGTGCGCGCCGCGCGCACCCTG
CTGGAGGTGTGCGCGATGCTGCACGGCCGCGCGACTCTGCCGGCCGGGGTGGCTCCGGTGGCGATTCCGGCCAGTACCGC
GGACATGCGCGATGTGCGCGGGCAGGCGCGCGCGCGCCGTGCGCTGGAGATCGCCGCCGCCGGTGGCCACCACCTGCTGC
TGGTGGGCCCGCCCGGATGCGGCAAGACGCTGCTCGCTTCGCGGCTCCCGGGACTGCTGCCGGAGCCCGGCGACGACGAG
GCCCTGGAAGCCGCCGCGGTGGCCTCGGTCAACGGCGGGCTGGACCCGGCGCGCTGGCGGCAACGGCCGTTCCGGGCACC
CCACCACACGGCCAGCGCGGTGGCGCTTGCCGGCGGCGGCAGCGAACCGCGGCCCGGCGAGATCTCGCTGGCGCACCGCG
GGGTGCTGTTCCTGGACGAGCTGCCCGAATGGAACCGCTCGGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGCGTG
GTGACGATCTCGCGCGCCGCGCGGCAGGCGGAGTTTCCTGCGCGCTTCCAGCTGGTCGCCGCGATGAATCCCTGTCCCTG
CGGCTGGGCGGGCGATACATCCGGACGCTGCCGCTGTGCACCCGACGCGGTGCGCCGCTACCGCTCGCGCATCTCCGGGC
CGCTGCTGGATCGCATCGACCTGCATGTGGAGGTGCCACGGCTGCCCGCCCATGAGCTGCGGCCGGATGCACCCGAAGGC
GAGGCAAGCGCTTCGATCCGTGCACGCGTCGAAGCATCGCGTGCATTGCAGCAGGCACGCAGCGGCCGCTGCAATGCGCA
GCTGGACCAAGCCGCGACCACCGCGCACTGCCGTCTGCGCGCGGCCGAACAGCAACTGCTCGAACGTGCGATCGAATCAC
TGCAGCTGTCGGCGCGGGCAATGCACCGCATCCTGCGCGTGGCCCGTACCATCGCCGACCTCGACGGCAGCGCCGACATC
CTCGCCCCGCACCTCGCCGAAGCACTGACCTATCGCGGTTTCACCCAGGAGCCGGTGGCCGCGGTGGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

98.41

0.547
  comM Vibrio campbellii strain DS40M4

54.949

98.41

0.541
  comM Glaesserella parasuis strain SC1401

53.586

99.801

0.535
  comM Haemophilus influenzae Rd KW20

53.908

99.205

0.535
  comM Legionella pneumophila str. Paris

52.314

98.807

0.517
  comM Legionella pneumophila strain ERS1305867

52.314

98.807

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.439

Multiple sequence alignment