Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | EKL02_RS16850 | Genome accession | NZ_CP035311 |
| Coordinates | 3779653..3780789 (+) | Length | 378 a.a. |
| NCBI ID | WP_128903113.1 | Uniprot ID | A0A410UWG2 |
| Organism | Janthinobacterium sp. 17J80-10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3774653..3785789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKL02_RS16830 (EKL02_16830) | - | 3775871..3776842 (+) | 972 | Protein_3328 | integron integrase | - |
| EKL02_RS16835 (EKL02_16835) | proC | 3776893..3777717 (-) | 825 | WP_128903110.1 | pyrroline-5-carboxylate reductase | - |
| EKL02_RS16840 (EKL02_16840) | - | 3777765..3778472 (-) | 708 | WP_128903111.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| EKL02_RS16845 (EKL02_16845) | pilT | 3778579..3779622 (+) | 1044 | WP_128903112.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| EKL02_RS16850 (EKL02_16850) | pilU | 3779653..3780789 (+) | 1137 | WP_128903113.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| EKL02_RS16855 (EKL02_16855) | - | 3780795..3781280 (+) | 486 | WP_128903114.1 | glutathione peroxidase | - |
| EKL02_RS16860 (EKL02_16860) | - | 3781308..3782033 (-) | 726 | WP_128903115.1 | LrgB family protein | - |
| EKL02_RS16865 (EKL02_16865) | - | 3782030..3782362 (-) | 333 | WP_128903116.1 | CidA/LrgA family protein | - |
| EKL02_RS16870 (EKL02_16870) | - | 3782427..3782978 (+) | 552 | WP_128903117.1 | cob(I)yrinic acid a,c-diamide adenosyltransferase | - |
| EKL02_RS16875 (EKL02_16875) | folE2 | 3782988..3783794 (-) | 807 | WP_128903118.1 | GTP cyclohydrolase FolE2 | - |
| EKL02_RS16880 (EKL02_16880) | dxs | 3783838..3785712 (-) | 1875 | WP_128903119.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42116.55 Da Isoelectric Point: 6.5911
>NTDB_id=339274 EKL02_RS16850 WP_128903113.1 3779653..3780789(+) (pilU) [Janthinobacterium sp. 17J80-10]
MERDQATKFMNDLLRLMVSKNGSDLFITAEYPPAFKIDGKMTPVSNQPLSPQHTIELARAIMSDKQAAEFEATKECNFAI
SPGGLGRFRVSAFVQQGRVGMVLRTITTKIPKLEDLGVPDILKEVVMTKRGLVIMVGATGSGKSTTLAGMVGYRNENSYG
HIITVEDPVEYIHPHHNCIVTQRDVGVDTEGWGVALKNTLRQAPDVIQIGEIRDRETMDFAIAFAETGHLCLATMHANSS
NQALDRIINFFPEERRQQLLMDLSLNLKAMISQRLIPLRDTKGRCVAVEVMLNSPLISDLIFKGDVHEIKEIMKKSQELG
MQTFDQALFELYEADKISYEDALRNADSVNDLRLTIKLRGKDAKGRDLSKGTEHLGIV
MERDQATKFMNDLLRLMVSKNGSDLFITAEYPPAFKIDGKMTPVSNQPLSPQHTIELARAIMSDKQAAEFEATKECNFAI
SPGGLGRFRVSAFVQQGRVGMVLRTITTKIPKLEDLGVPDILKEVVMTKRGLVIMVGATGSGKSTTLAGMVGYRNENSYG
HIITVEDPVEYIHPHHNCIVTQRDVGVDTEGWGVALKNTLRQAPDVIQIGEIRDRETMDFAIAFAETGHLCLATMHANSS
NQALDRIINFFPEERRQQLLMDLSLNLKAMISQRLIPLRDTKGRCVAVEVMLNSPLISDLIFKGDVHEIKEIMKKSQELG
MQTFDQALFELYEADKISYEDALRNADSVNDLRLTIKLRGKDAKGRDLSKGTEHLGIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=339274 EKL02_RS16850 WP_128903113.1 3779653..3780789(+) (pilU) [Janthinobacterium sp. 17J80-10]
ATGGAACGCGATCAAGCAACCAAATTCATGAACGACTTGCTGCGCCTGATGGTCAGCAAGAATGGCTCGGACCTGTTCAT
CACCGCAGAATACCCGCCGGCCTTCAAGATCGACGGCAAGATGACGCCGGTATCGAACCAGCCGCTCTCGCCCCAGCACA
CCATCGAGCTGGCGCGCGCCATCATGAGCGACAAGCAGGCAGCCGAATTCGAGGCGACCAAGGAATGCAACTTCGCCATC
AGCCCCGGCGGGCTGGGTCGCTTCCGCGTCTCCGCCTTCGTGCAGCAGGGCCGCGTAGGGATGGTGCTGCGGACCATCAC
CACCAAGATTCCCAAGCTCGAAGACCTGGGCGTGCCGGACATCCTGAAGGAAGTGGTGATGACCAAGCGCGGCCTGGTGA
TCATGGTCGGCGCCACCGGCTCCGGCAAATCCACCACCCTGGCCGGCATGGTCGGCTACCGCAACGAAAACAGCTACGGC
CACATCATCACAGTTGAAGACCCGGTCGAATACATCCACCCGCACCACAACTGCATCGTCACCCAGCGCGACGTCGGCGT
CGACACCGAGGGCTGGGGCGTGGCCCTGAAAAACACCTTGCGCCAGGCGCCGGACGTGATCCAGATCGGCGAAATCCGCG
ACCGCGAAACCATGGATTTCGCCATTGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCATGCACGCCAACAGCTCC
AACCAGGCGCTCGACCGCATCATCAACTTCTTCCCGGAAGAGCGCCGCCAGCAATTGCTGATGGACTTGTCGCTGAACCT
GAAAGCCATGATCTCGCAGCGCCTGATTCCGCTGCGCGACACCAAGGGCCGCTGCGTGGCAGTCGAGGTGATGCTGAATT
CGCCGCTGATTTCCGACCTGATCTTCAAGGGCGATGTCCACGAGATCAAGGAAATCATGAAGAAGTCGCAGGAGCTGGGC
ATGCAGACCTTCGACCAGGCCCTGTTCGAGCTCTACGAAGCCGACAAGATTTCGTATGAAGACGCATTGCGCAACGCCGA
CTCGGTCAACGACCTGCGCCTGACGATCAAGCTGCGCGGCAAGGACGCAAAGGGCCGCGACCTCTCCAAGGGCACGGAGC
ACCTGGGCATCGTATGA
ATGGAACGCGATCAAGCAACCAAATTCATGAACGACTTGCTGCGCCTGATGGTCAGCAAGAATGGCTCGGACCTGTTCAT
CACCGCAGAATACCCGCCGGCCTTCAAGATCGACGGCAAGATGACGCCGGTATCGAACCAGCCGCTCTCGCCCCAGCACA
CCATCGAGCTGGCGCGCGCCATCATGAGCGACAAGCAGGCAGCCGAATTCGAGGCGACCAAGGAATGCAACTTCGCCATC
AGCCCCGGCGGGCTGGGTCGCTTCCGCGTCTCCGCCTTCGTGCAGCAGGGCCGCGTAGGGATGGTGCTGCGGACCATCAC
CACCAAGATTCCCAAGCTCGAAGACCTGGGCGTGCCGGACATCCTGAAGGAAGTGGTGATGACCAAGCGCGGCCTGGTGA
TCATGGTCGGCGCCACCGGCTCCGGCAAATCCACCACCCTGGCCGGCATGGTCGGCTACCGCAACGAAAACAGCTACGGC
CACATCATCACAGTTGAAGACCCGGTCGAATACATCCACCCGCACCACAACTGCATCGTCACCCAGCGCGACGTCGGCGT
CGACACCGAGGGCTGGGGCGTGGCCCTGAAAAACACCTTGCGCCAGGCGCCGGACGTGATCCAGATCGGCGAAATCCGCG
ACCGCGAAACCATGGATTTCGCCATTGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCATGCACGCCAACAGCTCC
AACCAGGCGCTCGACCGCATCATCAACTTCTTCCCGGAAGAGCGCCGCCAGCAATTGCTGATGGACTTGTCGCTGAACCT
GAAAGCCATGATCTCGCAGCGCCTGATTCCGCTGCGCGACACCAAGGGCCGCTGCGTGGCAGTCGAGGTGATGCTGAATT
CGCCGCTGATTTCCGACCTGATCTTCAAGGGCGATGTCCACGAGATCAAGGAAATCATGAAGAAGTCGCAGGAGCTGGGC
ATGCAGACCTTCGACCAGGCCCTGTTCGAGCTCTACGAAGCCGACAAGATTTCGTATGAAGACGCATTGCGCAACGCCGA
CTCGGTCAACGACCTGCGCCTGACGATCAAGCTGCGCGGCAAGGACGCAAAGGGCCGCGACCTCTCCAAGGGCACGGAGC
ACCTGGGCATCGTATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
63.085 |
96.032 |
0.606 |
| pilU | Acinetobacter baylyi ADP1 |
58.774 |
94.974 |
0.558 |
| pilU | Vibrio cholerae strain A1552 |
54.494 |
94.18 |
0.513 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.95 |
89.153 |
0.365 |