Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EKL02_RS02630 Genome accession   NZ_CP035311
Coordinates   614119..615648 (-) Length   509 a.a.
NCBI ID   WP_128900588.1    Uniprot ID   A0A410UP74
Organism   Janthinobacterium sp. 17J80-10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609119..620648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS02610 (EKL02_02610) - 611205..611720 (-) 516 WP_128903349.1 DUF4390 domain-containing protein -
  EKL02_RS02615 (EKL02_02615) rsmB 611845..613155 (-) 1311 WP_128900586.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  EKL02_RS02620 (EKL02_02620) - 613161..613511 (-) 351 WP_128900587.1 DUF1840 domain-containing protein -
  EKL02_RS02625 (EKL02_02625) - 613533..614063 (-) 531 WP_241687767.1 hypothetical protein -
  EKL02_RS02630 (EKL02_02630) comM 614119..615648 (-) 1530 WP_128900588.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EKL02_RS02635 (EKL02_02635) - 615732..616100 (-) 369 WP_128900589.1 aminoacyl-tRNA synthetase -
  EKL02_RS02640 (EKL02_02640) - 616157..617011 (-) 855 WP_128900590.1 alpha/beta hydrolase -
  EKL02_RS02645 (EKL02_02645) - 617047..617499 (-) 453 WP_206732441.1 PaaI family thioesterase -
  EKL02_RS02650 (EKL02_02650) - 617546..619210 (-) 1665 WP_128900591.1 electron transfer flavoprotein-ubiquinone oxidoreductase -
  EKL02_RS02655 (EKL02_02655) - 619254..620069 (-) 816 WP_128900592.1 DUF169 domain-containing protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54604.36 Da        Isoelectric Point: 7.9893

>NTDB_id=339258 EKL02_RS02630 WP_128900588.1 614119..615648(-) (comM) [Janthinobacterium sp. 17J80-10]
MSLAVLKSRALTGMQAQEVTVEVHLANGLPSFTIVGLPDTEVKEARDRVRAALQNGRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPADELDRYEFAGELSLSGELRPIRGALAMTYAMRNSSAAAGRQRAFILPQANAAEAALVMDAAI
LPATSLQQVCAHFAAPQGDDRLARHHAAAATQTALPRYPDFAEVKGQLHAKRALEVAAAGGHSILMVGPPGTGKSMLAAR
FPGILPPMSDEEALESAAVQSLTGVFAAANWKTRPFRAPHHTASGVALVGGGGNPRPGEISLAHRGVLFLDELPEFDRRV
LEVLREPLESGHITISRAARQADFPARFQLVAAMNPCPCGYLGHSDNKCRCSPDMVARYQSRVSGPLLDRIDLQIQVASL
PRDDLLRQADGVASAAIAARTEQAFVRQHARQDKANHALSPAEVDAWCCPDPDAQELLRNAMARLNWSARAYHRVLKVAR
TIADLASADVIGTAHVAEAIQYRRALQVQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=339258 EKL02_RS02630 WP_128900588.1 614119..615648(-) (comM) [Janthinobacterium sp. 17J80-10]
ATGAGCCTGGCAGTCCTGAAAAGCCGCGCGCTAACCGGCATGCAGGCGCAAGAAGTCACGGTCGAAGTCCACCTGGCCAA
TGGCTTGCCGTCATTTACCATCGTCGGCTTGCCCGATACCGAGGTCAAGGAAGCGCGCGACCGTGTGCGGGCCGCGTTGC
AAAATGGCCGCTTCGAATTTCCCGCGCGACGCATCACCGTCAACCTGGCGCCGGCCGACTTGCCCAAGGAATCCGGCCGC
TTCGATCTGCCGATTGCACTGGGCATCCTGGCAGCGTCCGGGCAAATTCCTGCAGATGAGCTGGACCGCTATGAATTCGC
CGGTGAACTGTCGCTGTCAGGCGAATTGCGTCCGATCCGCGGCGCGCTCGCAATGACCTATGCCATGCGCAACAGCAGCG
CCGCCGCAGGGCGCCAGCGTGCCTTCATCCTGCCGCAAGCCAATGCCGCCGAGGCCGCGCTCGTGATGGATGCCGCCATC
CTTCCGGCCACGTCGTTGCAGCAGGTATGCGCCCACTTCGCCGCACCGCAAGGCGACGACCGCCTGGCGCGCCACCATGC
CGCAGCGGCCACGCAGACGGCCCTGCCGCGCTATCCGGATTTTGCCGAAGTCAAGGGCCAGCTGCATGCCAAGCGGGCGC
TGGAAGTGGCTGCAGCGGGCGGCCATAGCATCCTGATGGTAGGGCCGCCCGGCACTGGAAAGTCGATGCTGGCGGCGCGA
TTTCCCGGCATCTTGCCGCCGATGTCGGACGAGGAAGCGCTCGAATCGGCCGCGGTGCAATCGTTGACTGGCGTGTTCGC
CGCCGCCAACTGGAAAACCCGGCCGTTTCGCGCGCCGCACCATACAGCCTCGGGCGTGGCCTTGGTCGGCGGCGGCGGCA
ATCCGCGCCCCGGCGAGATTTCGCTGGCGCACCGCGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCGACCGCCGCGTC
CTGGAAGTCTTGCGTGAGCCGCTGGAATCGGGCCACATCACCATTTCGCGCGCCGCGCGCCAGGCAGATTTCCCGGCACG
ATTCCAGCTGGTGGCAGCCATGAATCCCTGCCCCTGCGGCTACCTGGGCCACAGCGACAACAAGTGCCGCTGTTCGCCGG
ACATGGTGGCACGTTACCAGTCACGCGTCTCCGGCCCCCTGCTGGACCGCATCGATTTGCAAATCCAGGTGGCATCGCTG
CCGCGTGACGACTTGCTGCGGCAGGCCGACGGGGTCGCCTCGGCGGCAATTGCCGCGCGTACCGAACAGGCTTTCGTGCG
CCAGCATGCGCGCCAGGACAAGGCCAACCATGCGCTGTCGCCCGCCGAGGTCGATGCATGGTGTTGCCCCGACCCGGATG
CGCAAGAATTGCTGCGCAATGCCATGGCGCGCCTGAACTGGTCGGCCCGCGCGTATCACCGGGTGCTGAAGGTGGCGCGC
ACAATCGCCGACCTGGCGTCGGCCGACGTCATTGGCACGGCACATGTCGCCGAAGCAATCCAGTATCGCCGCGCACTGCA
GGTGCAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-402)

Subunit ChlI of Mg-chelatase (ChlI)

(21-148)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410UP74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.069

99.214

0.527
  comM Vibrio cholerae strain A1552

53.069

99.214

0.527
  comM Glaesserella parasuis strain SC1401

51.468

100

0.517
  comM Legionella pneumophila strain ERS1305867

49.615

100

0.507
  comM Legionella pneumophila str. Paris

49.615

100

0.507
  comM Haemophilus influenzae Rd KW20

50.693

99.214

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.41

98.625

0.468

Multiple sequence alignment