Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ESP48_RS02335 Genome accession   NZ_CP035306
Coordinates   436064..438034 (-) Length   656 a.a.
NCBI ID   WP_064355565.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain IDCC2201     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 431064..443034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP48_RS02315 (ESP48_02315) amiF 431567..432496 (-) 930 WP_064355555.1 ATP-binding cassette domain-containing protein Regulator
  ESP48_RS02320 (ESP48_02320) amiE 432489..433574 (-) 1086 WP_064355558.1 ABC transporter ATP-binding protein Regulator
  ESP48_RS02325 (ESP48_02325) amiD 433584..434510 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  ESP48_RS02330 (ESP48_02330) amiC 434510..436003 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  ESP48_RS02335 (ESP48_02335) amiA3 436064..438034 (-) 1971 WP_064355565.1 peptide ABC transporter substrate-binding protein Regulator
  ESP48_RS02340 (ESP48_02340) - 438270..438460 (-) 191 Protein_441 IS3 family transposase -
  ESP48_RS10595 - 438451..438863 (-) 413 Protein_442 ATP-binding cassette domain-containing protein -
  ESP48_RS10600 (ESP48_02355) - 438895..439209 (-) 315 Protein_443 TatD family hydrolase -
  ESP48_RS02360 (ESP48_02360) - 439557..440762 (+) 1206 WP_011681420.1 L-lactate MFS transporter -
  ESP48_RS02365 (ESP48_02365) - 440808..442121 (-) 1314 Protein_445 IS3 family transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72205.10 Da        Isoelectric Point: 4.9246

>NTDB_id=339160 ESP48_RS02335 WP_064355565.1 436064..438034(-) (amiA3) [Streptococcus thermophilus strain IDCC2201]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTEPGASTLAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPVHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATVNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKDFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASIQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=339160 ESP48_RS02335 WP_064355565.1 436064..438034(-) (amiA3) [Streptococcus thermophilus strain IDCC2201]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATTGGCTATTGGTGTAAACATTGACCGTCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAGTTCATTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACAGTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGATTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

96.804

100

0.97
  amiA3 Streptococcus thermophilus LMD-9

96.804

100

0.97
  amiA Streptococcus salivarius strain HSISS4

91.768

100

0.918

Multiple sequence alignment