Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EO087_RS10900 Genome accession   NZ_CP035300
Coordinates   2348492..2350006 (-) Length   504 a.a.
NCBI ID   WP_128898889.1    Uniprot ID   A0A410UJF0
Organism   Dyella sp. M7H15-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2343492..2355006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO087_RS10880 (EO087_10880) ubiB 2343681..2345228 (+) 1548 Protein_2129 ubiquinone biosynthesis regulatory protein kinase UbiB -
  EO087_RS10885 (EO087_10885) arfB 2345351..2345773 (+) 423 WP_128898886.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  EO087_RS10890 (EO087_10890) - 2345770..2346363 (+) 594 WP_128898887.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  EO087_RS10895 (EO087_10895) - 2346632..2348425 (-) 1794 WP_128898888.1 sodium:proton antiporter -
  EO087_RS10900 (EO087_10900) comM 2348492..2350006 (-) 1515 WP_128898889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EO087_RS10905 (EO087_10905) - 2350153..2350410 (-) 258 WP_128898890.1 accessory factor UbiK family protein -
  EO087_RS10910 (EO087_10910) glnK 2350593..2350931 (+) 339 WP_128898891.1 P-II family nitrogen regulator -
  EO087_RS10915 (EO087_10915) gpmA 2351107..2351850 (-) 744 WP_128898892.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  EO087_RS10920 (EO087_10920) hemF 2351983..2352888 (-) 906 WP_128899904.1 oxygen-dependent coproporphyrinogen oxidase -
  EO087_RS16775 (EO087_10925) - 2353045..2353164 (+) 120 Protein_2138 beta-ketoacyl-[acyl-carrier-protein] synthase II -
  EO087_RS10930 (EO087_10930) - 2353380..2354144 (+) 765 WP_240669026.1 glycosyltransferase family 2 protein -
  EO087_RS10935 (EO087_10935) - 2354149..2354589 (-) 441 WP_240669027.1 phosphotransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54724.64 Da        Isoelectric Point: 7.8891

>NTDB_id=339058 EO087_RS10900 WP_128898889.1 2348492..2350006(-) (comM) [Dyella sp. M7H15-1]
MSLAVTLSRAQEGVAAPQVMVEVHLSGGLPSTHIVGLPEAAVREARDRVRVAIQSAAFEYPNRKVTVNLAPAELPKDGGR
FDLAIALGILAAGHQVPREKLDDCEFLGELALSGQLRPVSGVLPALLRARARGRRVVVPRANADEAALISEVDVRVADTL
TDVCSWLRGAQELPQPTSSFTLTSDNASLDLIDVRGQLQARRALEIAAVGGHHLLLMGPPGTGKTMLAERLPGILPPMTE
SEALETCAVMSVAGQPVDPAQWRRRPFRAPHHTASGAALVGGGSQPRPGEISLAHNGVLFLDEFPEFSRHVLEVLREPME
SGHILISRAARQLSFPAQFQLVAAMNPCPCGYAGDTRQRCRCTPDQVLRYRSRISGPLLDRIDLCMEVPIVPLSELSSPR
TTQDEDSATIRTRVIRARQHALARAGRPNAEISTRELERDCALGPAERRWFDGALERLGLSARAYHRTLRVARTIADLDN
GAAALDRQHLAESLQYRRLSLLSD

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=339058 EO087_RS10900 WP_128898889.1 2348492..2350006(-) (comM) [Dyella sp. M7H15-1]
ATGAGCTTGGCTGTCACGCTAAGTCGTGCCCAGGAGGGCGTCGCAGCTCCACAGGTGATGGTGGAAGTGCATCTTTCTGG
TGGTTTGCCCAGTACCCATATCGTTGGTTTGCCCGAGGCGGCTGTCCGCGAGGCGCGCGATCGCGTGCGGGTGGCCATCC
AGAGCGCCGCATTCGAATACCCCAACCGCAAGGTCACGGTGAATCTGGCCCCTGCCGAATTGCCCAAGGATGGCGGTCGT
TTCGATCTGGCCATCGCCCTGGGTATCCTGGCGGCTGGTCACCAGGTACCGCGCGAAAAGCTCGACGATTGCGAATTCCT
CGGCGAACTGGCTCTTTCCGGCCAGCTGCGGCCGGTTTCGGGGGTGCTGCCCGCCTTGCTTAGGGCAAGGGCTCGCGGGC
GACGGGTGGTCGTGCCGCGAGCCAATGCCGATGAGGCTGCGCTGATTTCCGAGGTCGACGTCCGCGTGGCGGACACGCTC
ACCGATGTCTGCAGCTGGCTACGGGGGGCGCAGGAACTGCCGCAGCCCACTTCATCCTTCACCCTGACCAGTGACAACGC
CAGTCTCGACCTGATCGATGTACGTGGTCAGTTACAAGCGCGCCGTGCGCTGGAAATTGCCGCAGTAGGCGGTCATCACC
TGTTGCTGATGGGGCCGCCTGGCACGGGCAAGACCATGCTCGCCGAGCGACTGCCAGGCATCTTGCCGCCAATGACCGAG
TCCGAAGCGCTGGAAACTTGCGCCGTGATGTCTGTCGCCGGCCAGCCTGTTGACCCTGCGCAATGGCGACGCCGCCCCTT
TCGTGCGCCGCATCACACAGCATCGGGCGCAGCGCTGGTAGGTGGTGGCTCGCAGCCCAGGCCGGGCGAGATTTCACTGG
CGCACAACGGCGTGCTGTTCCTTGACGAATTTCCCGAGTTCAGCCGTCACGTGCTGGAAGTGCTACGCGAGCCGATGGAA
TCTGGGCATATCCTTATTTCACGTGCGGCGCGCCAGTTGAGCTTCCCCGCGCAGTTCCAGCTTGTTGCGGCCATGAATCC
CTGTCCCTGCGGATATGCAGGGGATACTCGTCAGCGCTGCCGCTGCACGCCGGACCAAGTCTTGCGCTACCGCTCGCGTA
TTTCCGGGCCGTTGCTGGATCGCATCGATCTGTGCATGGAAGTCCCCATCGTGCCGCTAAGCGAATTAAGCTCCCCGCGT
ACCACCCAGGACGAAGATTCCGCCACCATCCGCACACGCGTCATCCGCGCGCGCCAGCATGCACTTGCGCGTGCCGGCCG
ACCAAATGCCGAAATCAGTACTCGGGAGTTGGAGCGCGACTGTGCGCTAGGCCCGGCCGAGCGTCGCTGGTTCGATGGCG
CGCTCGAACGATTAGGTTTGTCGGCACGTGCCTACCACCGGACACTGCGCGTTGCCCGTACGATTGCCGACCTAGACAAC
GGCGCTGCCGCGCTTGATCGCCAACATCTGGCTGAGTCCTTGCAGTACCGGCGTTTGTCCCTGCTCTCAGATTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410UJF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.382

99.603

0.542
  comM Haemophilus influenzae Rd KW20

52.964

100

0.532
  comM Vibrio campbellii strain DS40M4

52.988

99.603

0.528
  comM Glaesserella parasuis strain SC1401

51.683

100

0.518
  comM Legionella pneumophila str. Paris

50.402

98.81

0.498
  comM Legionella pneumophila strain ERS1305867

50.402

98.81

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.44

Multiple sequence alignment