Detailed information NTG0338060

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: FTN78_RS11065
• Genome accession: NZ_CP043523
• Coordinates: 2139322..2140323 (+)
• Length: 333 a.a.
• NCBI ID: WP_003131994.1
• Uniprot ID: Q9CDL3
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2134322..2145323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FTN78_RS11050 (FTN78_chr2208)	-	2135696..2136391 (+)	696	WP_010906384.1	hypothetical protein	-
FTN78_RS11055 (FTN78_chr2209)	hexB	2136520..2138490 (+)	1971	WP_031297070.1	DNA mismatch repair endonuclease MutL	Machinery gene
FTN78_RS11060 (FTN78_chr2210)	ruvA	2138603..2139196 (+)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
FTN78_RS11065 (FTN78_chr2211)	ruvB	2139322..2140323 (+)	1002	WP_003131994.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FTN78_RS11070 (FTN78_chr2212)	-	2140460..2141344 (+)	885	WP_010906381.1	XRE/MutR family transcriptional regulator	-
FTN78_RS11080 (FTN78_chr2215)	-	2141921..2143138 (+)	1218	WP_150891148.1	ABC transporter permease	-
FTN78_RS11085 (FTN78_chr2216)	-	2143098..2144045 (-)	948	WP_003130410.1	IS30 family transposase	-
FTN78_RS11090 (FTN78_chr2217)	-	2144182..2144799 (+)	618	WP_010906379.1	AAA family ATPase	-
FTN78_RS13690 (FTN78_chr2218)	-	2144904..2145068 (+)	165	WP_003131988.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37633.17 Da
• Isoelectric Point: 4.5825

>NTDB_id=338060 FTN78_RS11065 WP_003131994.1 2139322..2140323(+) (ruvB) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=338060 FTN78_RS11065 WP_003131994.1 2139322..2140323(+) (ruvB) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGCCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCAATTTTGAATGAATTGGAACCTGGCGATGTACT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCACGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGGTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: Q9CDL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48