Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | MDS_RS02905 | Genome accession | NC_015410 |
| Coordinates | 624926..625552 (+) | Length | 208 a.a. |
| NCBI ID | WP_013713727.1 | Uniprot ID | - |
| Organism | Ectopseudomonas mendocina NK-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 619926..630552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MDS_RS02890 (MDS_0579) | - | 620697..623108 (-) | 2412 | WP_013713725.1 | penicillin-binding protein 1A | - |
| MDS_RS02895 (MDS_0580) | pilM | 623290..624354 (+) | 1065 | WP_013713726.1 | pilus assembly protein PilM | Machinery gene |
| MDS_RS02900 | pilN | 624354..624929 (+) | 576 | WP_041769326.1 | PilN domain-containing protein | Machinery gene |
| MDS_RS02905 (MDS_0581) | pilO | 624926..625552 (+) | 627 | WP_013713727.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| MDS_RS02910 (MDS_0582) | pilP | 625549..626073 (+) | 525 | WP_085982452.1 | type 4a pilus biogenesis lipoprotein PilP | Machinery gene |
| MDS_RS02915 (MDS_0583) | pilQ | 626128..628242 (+) | 2115 | WP_013713729.1 | type IV pilus secretin PilQ | Machinery gene |
| MDS_RS02920 (MDS_0584) | aroK | 628248..628766 (+) | 519 | WP_026042192.1 | shikimate kinase AroK | - |
| MDS_RS02925 (MDS_0585) | aroB | 628818..629921 (+) | 1104 | WP_013713731.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 208 a.a. Molecular weight: 23338.58 Da Isoelectric Point: 4.4865
>NTDB_id=33788 MDS_RS02905 WP_013713727.1 624926..625552(+) (pilO) [Ectopseudomonas mendocina NK-01]
MSLSESIESLRKFDLNDLDINNVGSWPSAVKGVIFVLFFVALLGAGYYFHLSDLRDQLDRTTSEEENLKQQFSSKAFQAA
NLEAYKEQMKEMEVSFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQIVVMGSYHDLATF
VSGVASLPRIVTLHDFEIKPVDKDGSSSALRMSVLAKTYRYNDKGLEK
MSLSESIESLRKFDLNDLDINNVGSWPSAVKGVIFVLFFVALLGAGYYFHLSDLRDQLDRTTSEEENLKQQFSSKAFQAA
NLEAYKEQMKEMEVSFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQIVVMGSYHDLATF
VSGVASLPRIVTLHDFEIKPVDKDGSSSALRMSVLAKTYRYNDKGLEK
Nucleotide
Download Length: 627 bp
>NTDB_id=33788 MDS_RS02905 WP_013713727.1 624926..625552(+) (pilO) [Ectopseudomonas mendocina NK-01]
ATGAGTCTTTCTGAATCTATTGAAAGCCTGCGCAAGTTCGATCTGAACGATCTCGATATCAATAATGTAGGTTCCTGGCC
GAGTGCGGTGAAGGGGGTGATCTTTGTCCTCTTCTTCGTGGCTCTGCTTGGGGCGGGTTATTACTTTCACCTGAGTGATC
TGCGCGATCAGCTTGATCGCACCACCTCGGAAGAGGAAAACCTGAAACAACAGTTTTCCAGCAAGGCATTCCAGGCAGCC
AACCTCGAGGCCTACAAGGAGCAGATGAAGGAGATGGAAGTCTCCTTCGGTGCCTTGTTGAGGCAGTTGCCGAGCGATAC
CGAAGTGCCAGGTCTGCTGGAAGACATCACCCGAACCGGGCTGGGGAGTGGCCTGGAATTCGAGGAGATCAAGCTGCTGC
CGGAAGTGACGCAGCAGTTCTACATCGAGCTGCCGATCCAGATCGTGGTAATGGGCAGCTATCATGACCTTGCCACCTTC
GTCAGTGGTGTGGCCAGCCTCCCACGTATCGTGACCTTGCACGACTTCGAAATAAAACCGGTGGATAAGGACGGTTCGTC
TTCCGCGTTGCGGATGAGCGTCCTGGCGAAGACTTATCGTTACAACGATAAGGGGCTGGAAAAATGA
ATGAGTCTTTCTGAATCTATTGAAAGCCTGCGCAAGTTCGATCTGAACGATCTCGATATCAATAATGTAGGTTCCTGGCC
GAGTGCGGTGAAGGGGGTGATCTTTGTCCTCTTCTTCGTGGCTCTGCTTGGGGCGGGTTATTACTTTCACCTGAGTGATC
TGCGCGATCAGCTTGATCGCACCACCTCGGAAGAGGAAAACCTGAAACAACAGTTTTCCAGCAAGGCATTCCAGGCAGCC
AACCTCGAGGCCTACAAGGAGCAGATGAAGGAGATGGAAGTCTCCTTCGGTGCCTTGTTGAGGCAGTTGCCGAGCGATAC
CGAAGTGCCAGGTCTGCTGGAAGACATCACCCGAACCGGGCTGGGGAGTGGCCTGGAATTCGAGGAGATCAAGCTGCTGC
CGGAAGTGACGCAGCAGTTCTACATCGAGCTGCCGATCCAGATCGTGGTAATGGGCAGCTATCATGACCTTGCCACCTTC
GTCAGTGGTGTGGCCAGCCTCCCACGTATCGTGACCTTGCACGACTTCGAAATAAAACCGGTGGATAAGGACGGTTCGTC
TTCCGCGTTGCGGATGAGCGTCCTGGCGAAGACTTATCGTTACAACGATAAGGGGCTGGAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Acinetobacter baumannii D1279779 |
41.981 |
100 |
0.428 |
| pilO | Legionella pneumophila strain ERS1305867 |
44.271 |
92.308 |
0.409 |
| comO/pilO | Acinetobacter baylyi ADP1 |
43.386 |
90.865 |
0.394 |