Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MDS_RS02900 Genome accession   NC_015410
Coordinates   624354..624929 (+) Length   191 a.a.
NCBI ID   WP_041769326.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina NK-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619354..629929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS02890 (MDS_0579) - 620697..623108 (-) 2412 WP_013713725.1 penicillin-binding protein 1A -
  MDS_RS02895 (MDS_0580) pilM 623290..624354 (+) 1065 WP_013713726.1 pilus assembly protein PilM Machinery gene
  MDS_RS02900 pilN 624354..624929 (+) 576 WP_041769326.1 PilN domain-containing protein Machinery gene
  MDS_RS02905 (MDS_0581) pilO 624926..625552 (+) 627 WP_013713727.1 type 4a pilus biogenesis protein PilO Machinery gene
  MDS_RS02910 (MDS_0582) pilP 625549..626073 (+) 525 WP_085982452.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MDS_RS02915 (MDS_0583) pilQ 626128..628242 (+) 2115 WP_013713729.1 type IV pilus secretin PilQ Machinery gene
  MDS_RS02920 (MDS_0584) aroK 628248..628766 (+) 519 WP_026042192.1 shikimate kinase AroK -
  MDS_RS02925 (MDS_0585) aroB 628818..629921 (+) 1104 WP_013713731.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21536.90 Da        Isoelectric Point: 10.0404

>NTDB_id=33787 MDS_RS02900 WP_041769326.1 624354..624929(+) (pilN) [Ectopseudomonas mendocina NK-01]
MARINLLPWREQLREERKQRFLVTLVGILVLAAGVIFLGDQMLSGAIDQQNARNDFIRKEITVLDARIKEISELKTRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTSVKMVGKKIDILGAAESNNRVSNLMRNLDASEWLEAPNLTQVKA
TTAGALDQANEFQLSVQQTQPAADVVVGDKQ

Nucleotide


Download         Length: 576 bp        

>NTDB_id=33787 MDS_RS02900 WP_041769326.1 624354..624929(+) (pilN) [Ectopseudomonas mendocina NK-01]
ATGGCGCGGATCAACTTACTCCCGTGGCGCGAACAGCTGCGCGAAGAGCGTAAGCAGCGGTTCTTGGTTACCTTGGTCGG
TATATTGGTTTTAGCAGCAGGCGTAATTTTTTTGGGCGATCAAATGCTTAGTGGGGCAATTGATCAACAAAATGCGCGTA
ACGATTTCATTCGCAAGGAAATTACGGTCCTAGATGCTCGTATCAAAGAAATCAGTGAGCTCAAAACGCGTCGCCAGCAA
CTTCTAGAGCGAATGAAAATTATCCAGGACCTGCAAGGTAATCGCCCGATTATTGGGCGTGTCTTCGATCAGTTGGTGAG
AACCTTGCCAGATGGCGTGTATTTTACCAGTGTTAAGATGGTTGGAAAAAAAATCGATATTCTCGGTGCGGCTGAATCTA
ATAACCGAGTTTCTAATTTGATGCGTAATCTGGATGCTTCTGAATGGCTAGAGGCTCCTAACCTGACTCAAGTCAAGGCT
ACCACAGCGGGAGCACTAGATCAGGCGAATGAATTTCAGTTAAGTGTTCAGCAGACTCAGCCTGCAGCAGATGTGGTCGT
GGGGGATAAGCAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

91.623

0.382