Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLM_RS05630 Genome accession   NC_012563
Coordinates   1243808..1244761 (+) Length   317 a.a.
NCBI ID   WP_012703844.1    Uniprot ID   -
Organism   Clostridium botulinum A2 str. Kyoto     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1238808..1249761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM_RS05605 (CLM_1196) - 1238929..1239165 (+) 237 WP_003356614.1 SHOCT domain-containing protein -
  CLM_RS05610 (CLM_1197) - 1239435..1240136 (+) 702 WP_012704055.1 response regulator transcription factor -
  CLM_RS05615 (CLM_1198) - 1240136..1241542 (+) 1407 WP_012704253.1 HAMP domain-containing sensor histidine kinase -
  CLM_RS05620 (CLM_1199) - 1241882..1242568 (-) 687 WP_012704714.1 DNA alkylation repair protein -
  CLM_RS05625 (CLM_1200) - 1242804..1243562 (-) 759 WP_003388491.1 AraC family transcriptional regulator -
  CLM_RS05630 (CLM_1201) ceuB 1243808..1244761 (+) 954 WP_012703844.1 ABC transporter permease Machinery gene
  CLM_RS05635 (CLM_1202) - 1244751..1245701 (+) 951 WP_012705102.1 iron chelate uptake ABC transporter family permease subunit -
  CLM_RS05640 (CLM_1203) - 1245698..1246453 (+) 756 WP_011948720.1 ATP-binding cassette domain-containing protein -
  CLM_RS05645 (CLM_1204) - 1246527..1247471 (+) 945 WP_012705065.1 siderophore ABC transporter substrate-binding protein -
  CLM_RS05650 (CLM_1205) - 1247674..1248675 (+) 1002 WP_012705541.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34861.21 Da        Isoelectric Point: 9.9543

>NTDB_id=33790 CLM_RS05630 WP_012703844.1 1243808..1244761(+) (ceuB) [Clostridium botulinum A2 str. Kyoto]
MKKRYLILALIILSICSIFIGVKDISFVDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVVVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=33790 CLM_RS05630 WP_012703844.1 1243808..1244761(+) (ceuB) [Clostridium botulinum A2 str. Kyoto]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TGTAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATTCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAAGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAGTAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTACTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGATTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.804

98.107

0.498

Multiple sequence alignment