Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AVIN_RS21860 Genome accession   NC_012560
Coordinates   4848441..4849937 (+) Length   498 a.a.
NCBI ID   WP_012703247.1    Uniprot ID   M9YMX0
Organism   Azotobacter vinelandii DJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4843441..4854937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVIN_RS21825 (Avin_47740) - 4843480..4844181 (+) 702 WP_012703240.1 HAD family hydrolase -
  AVIN_RS21830 (Avin_47750) - 4844227..4844994 (+) 768 WP_012703241.1 CPBP family intramembrane glutamic endopeptidase -
  AVIN_RS21835 (Avin_47760) sutA 4845061..4845381 (-) 321 WP_012703242.1 transcriptional regulator SutA -
  AVIN_RS21840 (Avin_47770) - 4845506..4845931 (-) 426 WP_012703243.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AVIN_RS21845 (Avin_47780) - 4846081..4847397 (-) 1317 WP_012703244.1 ammonium transporter -
  AVIN_RS21850 (Avin_47790) glnK 4847431..4847769 (-) 339 WP_012703245.1 P-II family nitrogen regulator -
  AVIN_RS21855 (Avin_47800) - 4848134..4848409 (+) 276 WP_012703246.1 accessory factor UbiK family protein -
  AVIN_RS21860 (Avin_47810) comM 4848441..4849937 (+) 1497 WP_012703247.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AVIN_RS21865 (Avin_47820) - 4850011..4851198 (+) 1188 WP_012703248.1 AAA family ATPase -
  AVIN_RS21870 (Avin_47830) - 4851195..4852076 (-) 882 WP_012703249.1 LysR family transcriptional regulator -
  AVIN_RS21875 (Avin_47840) - 4852191..4852613 (+) 423 WP_012703250.1 DoxX family protein -
  AVIN_RS21880 (Avin_47850) - 4852664..4853392 (+) 729 WP_012703251.1 pirin family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52296.24 Da        Isoelectric Point: 8.1441

>NTDB_id=33784 AVIN_RS21860 WP_012703247.1 4848441..4849937(+) (comM) [Azotobacter vinelandii DJ]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVRESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASEQLPAGSLDGLECLGELALSGGLRPVRGVLPAALAARAAGRTLVVPRANAEEASLASGLNVLAIDHL
LELAAHLNGRTPLAPYRSSGLLRQTLPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIHSVAGSAPLAAWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARASDKVRFPARFQLVAAMNPCPCGYLGDPAGRCRCTPEQIQRYRAKLSGPLLDRIDLHIGVAREATALGAPRLD
GPDSTGAAAQVAAARNLQLARQGCPNAFLDLPGLHQHCALSDEDRQWLERACERLGLSLRAAHRVLKVARTLADLEALPG
IARAHLAEALQYRPAAHA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=33784 AVIN_RS21860 WP_012703247.1 4848441..4849937(+) (comM) [Azotobacter vinelandii DJ]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCCGCCGTCACCGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACTGCGGTCCGCGAGAGCAAGGACCGCGTGCGCAGCGCCATCC
TCACCTCCGGCTTCGATTTTCCGGCACGGCGTATCACCCTCAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTCGGCATCCTCGCCGCCAGCGAGCAATTGCCCGCGGGGTCGCTGGACGGCCTGGAATGCCT
GGGCGAACTGGCCCTCTCCGGCGGCCTGCGCCCGGTCCGGGGCGTGCTGCCCGCCGCGCTGGCCGCGCGCGCCGCCGGAC
GCACCCTGGTGGTGCCGCGGGCGAACGCCGAAGAGGCCAGCCTGGCGTCGGGCCTGAACGTGCTGGCGATCGACCACCTG
CTGGAACTGGCCGCCCACCTGAACGGCCGGACCCCGCTCGCGCCCTACCGGTCCAGCGGCCTGCTGCGACAGACGCTTCC
CTACCCCGACCTCGCCGAGGTGCAGGGCCAGGCTGCGGCCAAGCGCGCCCTGCTGGTGGCGGCGGCAGGAGCCCACAACC
TCCTGTTGAGCGGGCCGCCCGGAACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCGCCTTTGGACGAA
CGCGAGGCGCTGGAGGTGGCGGCGATCCATTCGGTGGCCGGCAGCGCGCCACTCGCCGCCTGGCCGCAGCGGCCGTTCCG
CCAGCCCCATCACAGCGCCTCGGGACCGGCGCTGGTCGGCGGCGGCAGCCGGCCGCGCCCCGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAATTGCCCGAATTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAGCCCCTGGAAAGC
GGCGAAATCGTCATCGCCCGGGCCAGCGACAAGGTGCGCTTTCCGGCGCGTTTCCAGTTGGTGGCGGCGATGAACCCCTG
TCCCTGCGGCTATCTGGGCGACCCCGCCGGCCGCTGTCGCTGCACCCCGGAGCAGATCCAGCGTTACCGCGCCAAGCTGT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACATCGGCGTCGCCCGCGAGGCCACCGCCCTGGGCGCGCCGCGCCTGGAC
GGCCCGGACAGCACCGGCGCCGCCGCCCAGGTGGCGGCGGCGCGCAACCTGCAACTCGCCCGCCAGGGCTGCCCCAATGC
CTTCCTCGACCTGCCCGGTCTGCACCAGCACTGTGCACTGAGCGACGAAGACCGCCAGTGGCTGGAGCGCGCCTGCGAAC
GCCTCGGCCTGTCGTTGCGCGCCGCCCACCGCGTCCTCAAGGTGGCACGCACCCTGGCCGATCTGGAGGCGCTGCCGGGC
ATCGCCCGCGCCCACCTGGCCGAAGCGCTGCAATACCGGCCGGCGGCGCATGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9YMX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Vibrio campbellii strain DS40M4

56.338

99.799

0.562
  comM Haemophilus influenzae Rd KW20

54.709

100

0.548
  comM Glaesserella parasuis strain SC1401

54.309

100

0.544
  comM Legionella pneumophila str. Paris

50.099

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.099

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.458

Multiple sequence alignment