Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LHK_RS13430 Genome accession   NC_012559
Coordinates   2848460..2849965 (+) Length   501 a.a.
NCBI ID   WP_012698378.1    Uniprot ID   C1D4X4
Organism   Laribacter hongkongensis HLHK9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2843460..2854965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS13410 (LHK_02932) - 2844883..2846043 (+) 1161 WP_012698373.1 histidinol-phosphate transaminase -
  LHK_RS13415 (LHK_02933) - 2846122..2847537 (-) 1416 WP_012698374.1 ammonium transporter -
  LHK_RS13420 (LHK_02934) - 2847575..2847913 (-) 339 WP_012698375.1 P-II family nitrogen regulator -
  LHK_RS13425 (LHK_02936) - 2848090..2848389 (+) 300 WP_012698377.1 accessory factor UbiK family protein -
  LHK_RS13430 (LHK_02937) comM 2848460..2849965 (+) 1506 WP_012698378.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LHK_RS13435 (LHK_02938) - 2850028..2850768 (+) 741 WP_012698379.1 SPOR domain-containing protein -
  LHK_RS13440 (LHK_02939) - 2850800..2851414 (+) 615 WP_012698380.1 thiol:disulfide interchange protein DsbA/DsbL -
  LHK_RS13445 (LHK_02940) - 2851490..2852311 (+) 822 WP_012698381.1 undecaprenyl-diphosphate phosphatase -
  LHK_RS16250 (LHK_02941) - 2852628..2853413 (+) 786 WP_012698382.1 hypothetical protein -
  LHK_RS13470 (LHK_02942) - 2853697..2854440 (+) 744 WP_012698383.1 cytochrome c5 family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52436.04 Da        Isoelectric Point: 7.7489

>NTDB_id=33756 LHK_RS13430 WP_012698378.1 2848460..2849965(+) (comM) [Laribacter hongkongensis HLHK9]
MSLATVKSRALAGADAPEVTVEVHLANGLPAFTLVGLPDTEVREARDRVRAALLHSGFDFPAARLTVNLAPADLPKDSGR
FDLPIALGILAASGQLPAAALETVEAAGELGLSGELRAVRGALAMACAVARTGHAFLVPQASAAEAALAGSLTVIGAPHL
AALVAHLDGRAPLPSQPAPEPAVPADSCGMPDLADVRGQAAARRALEVAAAGGHSLLLSGAPGTGKSMLAARLPGILPLL
TRQEALEVASIQSLSGSFRADQFGQRPYRSPHHHTSAAALIGGGSDPRPGEITLAHGGVLFLDELPEFDRKVLENLREPL
ERGEVDIARVHRHVRFPARFQLVAAMNPCPCGYLGHPGGRCRCTPATIDRYRHKLSGPLLDRVDLMLETGSLTAEELQQA
PPGESSAVVRARVVAARQRQLERQGCCNAALAGSQLEAVATPEPAACSLLHQAIRQLGLSARAYHRILRVARTLADLDAA
PHPDSRHVAEAIHYRRGLTAR

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=33756 LHK_RS13430 WP_012698378.1 2848460..2849965(+) (comM) [Laribacter hongkongensis HLHK9]
ATGAGCCTAGCCACCGTCAAAAGTCGTGCACTGGCCGGTGCCGATGCACCAGAAGTGACCGTCGAAGTCCATCTGGCCAA
TGGCCTGCCGGCCTTTACCCTCGTGGGCCTGCCCGACACCGAGGTCCGCGAAGCCCGTGACCGCGTGCGCGCCGCCCTGC
TCCACAGCGGCTTTGACTTTCCGGCCGCCCGCCTCACCGTCAACCTGGCACCGGCCGACCTGCCCAAGGATTCCGGCCGG
TTTGACCTGCCCATTGCACTGGGTATCCTGGCGGCCAGCGGGCAACTGCCTGCCGCCGCGCTGGAAACGGTGGAGGCCGC
CGGAGAACTCGGCCTGTCCGGCGAGCTGCGCGCGGTACGCGGGGCACTGGCCATGGCCTGCGCCGTGGCCCGGACCGGCC
ATGCCTTCCTCGTGCCGCAGGCCAGTGCTGCCGAAGCCGCGCTGGCAGGCAGCCTGACCGTCATCGGCGCGCCGCATCTG
GCTGCCCTGGTGGCGCATCTGGACGGTCGTGCGCCCCTGCCTTCGCAACCGGCCCCGGAACCAGCAGTGCCGGCGGACAG
CTGCGGCATGCCGGACCTCGCGGACGTACGCGGCCAGGCAGCCGCCCGCCGGGCACTGGAAGTCGCCGCAGCCGGCGGAC
ATTCCCTGCTGCTCAGCGGCGCACCCGGTACCGGCAAATCCATGCTGGCCGCGCGCCTGCCGGGCATCCTGCCCCTGCTG
ACCCGGCAGGAAGCGCTGGAAGTCGCCAGCATCCAGTCTTTGTCCGGCAGTTTTCGTGCTGACCAGTTCGGCCAGCGCCC
CTACCGTTCTCCTCATCACCACACCTCTGCTGCCGCCCTGATCGGAGGCGGCAGTGATCCGCGTCCGGGCGAGATCACGC
TGGCGCATGGTGGTGTCCTGTTTCTGGATGAATTGCCGGAATTCGACCGCAAGGTGCTGGAAAACCTGCGCGAGCCACTG
GAGCGCGGCGAAGTGGACATTGCCCGCGTGCACCGCCACGTACGTTTTCCCGCCCGCTTCCAGCTGGTCGCGGCCATGAA
TCCGTGTCCGTGCGGCTATCTGGGCCATCCTGGCGGACGCTGCCGCTGCACACCCGCCACCATCGACCGCTATCGCCACA
AGCTGTCCGGCCCCTTGCTTGACCGGGTGGACCTGATGCTGGAAACGGGATCGCTGACGGCAGAAGAGCTCCAGCAGGCT
CCGCCGGGCGAAAGCAGTGCCGTGGTCCGCGCCCGCGTGGTTGCCGCCCGGCAGCGCCAGCTGGAACGGCAGGGCTGTTG
CAATGCCGCTCTTGCCGGCTCGCAGCTGGAAGCGGTCGCCACGCCGGAACCGGCCGCCTGCTCCCTGCTGCATCAGGCCA
TCCGGCAACTGGGCCTGTCGGCCCGCGCCTATCACCGCATCCTGCGGGTGGCGCGCACGCTGGCCGATCTGGATGCGGCA
CCGCACCCGGACAGCCGGCACGTTGCCGAGGCCATCCATTACCGCCGCGGCCTGACGGCACGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1D4X4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.911

99.202

0.515
  comM Vibrio campbellii strain DS40M4

51.107

99.202

0.507
  comM Haemophilus influenzae Rd KW20

50.1

99.601

0.499
  comM Glaesserella parasuis strain SC1401

48.497

99.601

0.483
  comM Legionella pneumophila str. Paris

46.322

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.322

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.028

100

0.431

Multiple sequence alignment