Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   SOR_RS04235 Genome accession   NC_015291
Coordinates   835618..836466 (+) Length   282 a.a.
NCBI ID   WP_000705338.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 830618..841466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS04220 (SOR_0862) - 832138..832866 (+) 729 WP_000133316.1 metallophosphoesterase family protein -
  SOR_RS04225 (SOR_0863) lepA 832945..834768 (+) 1824 WP_001047198.1 translation elongation factor 4 -
  SOR_RS04230 (SOR_0864) - 834913..835536 (+) 624 WP_000734757.1 hypothetical protein -
  SOR_RS04235 (SOR_0865) dprA/cilB/dalA 835618..836466 (+) 849 WP_000705338.1 DNA-processing protein DprA Machinery gene
  SOR_RS04240 (SOR_0866) topA 836583..838669 (+) 2087 Protein_793 type I DNA topoisomerase -
  SOR_RS04245 (SOR_0867) - 838776..839135 (+) 360 WP_001220358.1 YbaN family protein -
  SOR_RS04250 (SOR_0868) - 839229..839861 (+) 633 WP_000638803.1 copper homeostasis protein CutC -
  SOR_RS04255 (SOR_0869) - 839905..840561 (+) 657 WP_000461567.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31259.76 Da        Isoelectric Point: 5.2027

>NTDB_id=33709 SOR_RS04235 WP_000705338.1 835618..836466(+) (dprA/cilB/dalA) [Streptococcus oralis Uo5]
MKITNYEIYKLRKAGLTNQQILTVLEYDETVDQELLLGDIAEISGCRNPAVFMERYFQIDDVQLEKEFQKFPSFSILDDC
YPWDLSEIYDAPALLFYKGNLDLLKFPKVAVVGSRSCSSQGAKSVQKVIQGLENELIVVSGLAKGIDTAAHMAALQNGGR
TIAVIGTGLDVFYPRANKRLQEHIGNHHLVLSEYGPGEEPLKFHFPARNRIIAGLCRGVIVAEARMRSGSLITCERAMEE
GRDVFAIPGNILDGHSDGCHHLIQEGAKLISSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=33709 SOR_RS04235 WP_000705338.1 835618..836466(+) (dprA/cilB/dalA) [Streptococcus oralis Uo5]
ATGAAAATCACAAACTATGAGATTTACAAATTGAGAAAAGCTGGGCTGACCAATCAACAGATTTTAACTGTTCTTGAATA
TGACGAGACTGTAGATCAGGAGCTCTTGCTAGGTGACATTGCGGAAATATCGGGGTGTCGTAATCCTGCGGTCTTTATGG
AACGCTATTTCCAGATAGATGATGTTCAGTTGGAGAAGGAGTTCCAAAAATTTCCATCCTTCTCGATTCTAGACGACTGT
TATCCTTGGGATTTGAGTGAGATTTATGATGCTCCAGCTCTCTTGTTTTATAAAGGGAATCTAGACTTATTGAAATTTCC
AAAGGTTGCTGTTGTAGGGAGTCGTTCATGTTCTAGTCAGGGAGCAAAGTCGGTTCAGAAAGTCATTCAAGGTTTGGAAA
ACGAGTTAATCGTGGTCAGTGGTTTGGCCAAAGGGATTGATACGGCTGCCCATATGGCTGCACTCCAGAATGGAGGAAGA
ACGATTGCTGTCATTGGAACAGGATTGGATGTTTTTTACCCCCGTGCCAATAAACGTTTGCAGGAACACATTGGTAATCA
CCATTTGGTACTTAGCGAATACGGACCTGGTGAGGAACCCTTGAAATTTCACTTTCCAGCTCGTAATCGAATCATAGCAG
GACTGTGTCGAGGGGTCATTGTAGCAGAGGCAAGAATGCGTTCTGGTAGTCTCATTACCTGTGAGCGAGCTATGGAGGAA
GGACGCGATGTTTTTGCTATTCCAGGAAACATTTTAGATGGCCATTCAGATGGCTGTCACCATCTGATTCAAGAGGGAGC
AAAGCTGATTAGTAGCGGTCAAGATGTGTTAGCAGAGTTTGAATTTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

91.135

100

0.911
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

90.78

100

0.908
  dprA/cilB/dalA Streptococcus pneumoniae D39

90.78

100

0.908
  dprA/cilB/dalA Streptococcus pneumoniae R6

90.78

100

0.908
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

90.78

100

0.908
  dprA/cilB/dalA Streptococcus mitis SK321

90.071

100

0.901
  dprA Streptococcus mutans UA159

60.714

99.291

0.603
  dprA Lactococcus lactis subsp. cremoris KW2

54.643

99.291

0.543