Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AGROH133_RS09085 Genome accession   NC_015183
Coordinates   1833059..1834150 (-) Length   363 a.a.
NCBI ID   WP_003516062.1    Uniprot ID   A0ACM8RBP9
Organism   Agrobacterium tumefaciens     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828059..1839150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGROH133_RS09070 (AGROH133_07013) - 1829001..1829627 (+) 627 WP_003516054.1 glutathione S-transferase family protein -
  AGROH133_RS09075 (AGROH133_07014) - 1829705..1830088 (-) 384 WP_013636406.1 VOC family protein -
  AGROH133_RS09080 (AGROH133_07015) alaS 1830164..1832827 (-) 2664 WP_025593920.1 alanine--tRNA ligase -
  AGROH133_RS09085 (AGROH133_07016) recA 1833059..1834150 (-) 1092 WP_003516062.1 recombinase RecA Machinery gene
  AGROH133_RS09090 (AGROH133_07017) - 1834397..1835338 (+) 942 WP_013636408.1 carbohydrate kinase family protein -
  AGROH133_RS09095 (AGROH133_07018) - 1835370..1836293 (+) 924 WP_013636409.1 pseudouridine-5'-phosphate glycosidase -
  AGROH133_RS09100 (AGROH133_07019) - 1836496..1838718 (-) 2223 WP_041694471.1 OmpA family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38900.43 Da        Isoelectric Point: 4.9761

>NTDB_id=33554 AGROH133_RS09085 WP_003516062.1 1833059..1834150(-) (recA) [Agrobacterium tumefaciens]
MAQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEVETISTGSLSLDIALGIGGLPKGRIVEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDILVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKEREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFL
RDNPEMASEIELALRQNAGLIADRFLQNGGPEAGESDDGPDEG

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=33554 AGROH133_RS09085 WP_003516062.1 1833059..1834150(-) (recA) [Agrobacterium tumefaciens]
ATGGCACAAAATTCTTTGCGTCTCGTAGAGGATAAATCGGTGGATAAAAGCAAGGCACTGGAAGCGGCGCTCTCCCAGAT
CGAACGGTCGTTCGGCAAGGGATCGATCATGAAGCTCGGTTCCAATGAAAACGTGGTTGAAGTAGAGACCATTTCGACGG
GTTCTCTCAGCCTGGATATAGCGCTCGGTATCGGCGGTTTGCCGAAGGGGCGTATCGTTGAGATTTACGGCCCGGAAAGC
TCCGGTAAGACGACGCTTGCGTTGCAGACGATCGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTGGATGCCGA
GCACGCGCTCGATCCGGTCTATGCCCGCAAGCTCGGTGTGGATTTGCAGAACCTTCTGATCTCGCAGCCGGATACGGGCG
AGCAGGCGCTTGAAATCACCGATACGCTGGTGCGCTCCGGTGCCGTCGACATTCTGGTGGTGGACTCGGTTGCGGCGCTG
ACGCCGCGTGCCGAAATCGAAGGCGAGATGGGTGACAGCCTGCCGGGCCTTCAGGCACGTCTGATGAGCCAGGCGCTGCG
CAAGCTGACAGCCTCGATCTCCAAGTCGAAGTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGT
TCGGTTCGCCGGAAACGACGACGGGCGGTAATGCGCTTAAATTCTACGCCTCGGTGCGTCTCGACATTCGCCGTATCGGC
GCCGTCAAGGAGCGTGAAGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCACCGCCTTTCAA
GCAGGTGGAATTCGACATCATGTATGGCGAAGGCGTTTCCAAGACCGGCGAGCTTGTCGATCTCGGCGTGAAAGCCGGTA
TCGTCGAGAAATCCGGTGCATGGTTCTCCTATAACAGCCAGCGTTTGGGGCAGGGGCGTGAAAATGCCAAAACCTTCCTG
CGCGACAATCCGGAAATGGCAAGCGAGATCGAACTGGCGCTGCGCCAGAACGCCGGTCTGATCGCCGATCGGTTCCTGCA
GAATGGCGGCCCGGAAGCCGGCGAAAGCGACGACGGTCCCGACGAGGGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.05

88.705

0.639
  recA Acinetobacter baumannii D1279779

71.739

88.705

0.636
  recA Vibrio cholerae strain A1552

71.739

88.705

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.739

88.705

0.636
  recA Acinetobacter nosocomialis M2

71.429

88.705

0.634
  recA Ralstonia pseudosolanacearum GMI1000

72.611

86.501

0.628
  recA Neisseria gonorrhoeae MS11

70.279

88.981

0.625
  recA Neisseria gonorrhoeae strain FA1090

70.279

88.981

0.625
  recA Pseudomonas stutzeri DSM 10701

70.405

88.43

0.623
  recA Glaesserella parasuis strain SC1401

70.312

88.154

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

90.083

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

90.083

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

65.644

89.807

0.59
  recA Staphylococcus aureus strain ATCC 12600

65.337

89.807

0.587
  recA Helicobacter pylori strain NCTC11637

65.031

89.807

0.584
  recA Helicobacter pylori 26695

64.724

89.807

0.581
  recA Streptococcus mitis SK321

60.405

95.317

0.576
  recA Streptococcus thermophilus LMG 18311

58.028

97.796

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.807

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.353

87.328

0.562
  recA Streptococcus mitis NCTC 12261

61.631

91.185

0.562
  recA Streptococcus pneumoniae R36A

61.329

91.185

0.559
  recA Streptococcus pneumoniae Rx1

61.329

91.185

0.559
  recA Streptococcus pneumoniae D39

61.329

91.185

0.559
  recA Streptococcus pneumoniae R6

61.329

91.185

0.559
  recA Streptococcus pneumoniae TIGR4

61.329

91.185

0.559
  recA Streptococcus thermophilus LMD-9

61.027

91.185

0.556
  recA Streptococcus mutans UA159

60.725

91.185

0.554
  recA Streptococcus pyogenes NZ131

60.486

90.634

0.548
  recA Lactococcus lactis subsp. cremoris KW2

59.159

91.736

0.543

Multiple sequence alignment