Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EQJ08_RS12245 Genome accession   NZ_CP035167
Coordinates   2396130..2396561 (-) Length   143 a.a.
NCBI ID   WP_038829732.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104008     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2391130..2401561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS12195 (EQJ08_12195) sinI 2391323..2391496 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  EQJ08_RS12200 (EQJ08_12200) sinR 2391530..2391865 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EQJ08_RS12205 (EQJ08_12205) tasA 2391957..2392742 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  EQJ08_RS12210 (EQJ08_12210) sipW 2392807..2393379 (-) 573 WP_077671469.1 signal peptidase I SipW -
  EQJ08_RS12215 (EQJ08_12215) tapA 2393363..2394124 (-) 762 WP_032726156.1 amyloid fiber anchoring/assembly protein TapA -
  EQJ08_RS12220 (EQJ08_12220) yqzG 2394396..2394722 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQJ08_RS12225 (EQJ08_12225) spoIITA 2394764..2394943 (-) 180 WP_014480252.1 YqzE family protein -
  EQJ08_RS12230 (EQJ08_12230) comGG 2395015..2395389 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  EQJ08_RS12235 (EQJ08_12235) comGF 2395390..2395773 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  EQJ08_RS12240 (EQJ08_12240) comGE 2395799..2396146 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  EQJ08_RS12245 (EQJ08_12245) comGD 2396130..2396561 (-) 432 WP_038829732.1 comG operon protein ComGD Machinery gene
  EQJ08_RS12250 (EQJ08_12250) comGC 2396551..2396847 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  EQJ08_RS12255 (EQJ08_12255) comGB 2396861..2397898 (-) 1038 WP_077671432.1 comG operon protein ComGB Machinery gene
  EQJ08_RS12260 (EQJ08_12260) comGA 2397885..2398955 (-) 1071 WP_070547533.1 competence protein ComGA Machinery gene
  EQJ08_RS12265 (EQJ08_12265) - 2399183..2399365 (-) 183 WP_033884706.1 hypothetical protein -
  EQJ08_RS12270 (EQJ08_12270) corA 2399367..2400320 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16123.67 Da        Isoelectric Point: 9.9080

>NTDB_id=335445 EQJ08_RS12245 WP_038829732.1 2396130..2396561(-) (comGD) [Bacillus subtilis strain SRCM104008]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQAAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=335445 EQJ08_RS12245 WP_038829732.1 2396130..2396561(-) (comGD) [Bacillus subtilis strain SRCM104008]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGGCTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTATATGATATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

95.804

100

0.958

Multiple sequence alignment