Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EQI48_RS12550 Genome accession   NZ_CP035164
Coordinates   2425128..2425424 (-) Length   98 a.a.
NCBI ID   WP_029726719.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104005     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2420128..2430424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS12505 (EQI48_12505) tasA 2420535..2421320 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  EQI48_RS12510 (EQI48_12510) sipW 2421384..2421956 (-) 573 WP_072692741.1 signal peptidase I SipW -
  EQI48_RS12515 (EQI48_12515) tapA 2421940..2422701 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  EQI48_RS12520 (EQI48_12520) yqzG 2422973..2423299 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQI48_RS12525 (EQI48_12525) spoIITA 2423341..2423520 (-) 180 WP_029726723.1 YqzE family protein -
  EQI48_RS12530 (EQI48_12530) comGG 2423592..2423966 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  EQI48_RS12535 (EQI48_12535) comGF 2423967..2424350 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  EQI48_RS12540 (EQI48_12540) comGE 2424376..2424723 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  EQI48_RS12545 (EQI48_12545) comGD 2424707..2425138 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  EQI48_RS12550 (EQI48_12550) comGC 2425128..2425424 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  EQI48_RS12555 (EQI48_12555) comGB 2425438..2426475 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  EQI48_RS12560 (EQI48_12560) comGA 2426462..2427532 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  EQI48_RS12565 (EQI48_12565) - 2427745..2427942 (-) 198 WP_029726717.1 hypothetical protein -
  EQI48_RS12570 (EQI48_12570) corA 2427944..2428897 (-) 954 WP_004399136.1 magnesium transporter CorA -
  EQI48_RS12575 (EQI48_12575) yqhB 2429040..2430368 (+) 1329 WP_029726716.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10835.67 Da        Isoelectric Point: 6.2112

>NTDB_id=335203 EQI48_RS12550 WP_029726719.1 2425128..2425424(-) (comGC) [Bacillus subtilis strain SRCM104005]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKNDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=335203 EQI48_RS12550 WP_029726719.1 2425128..2425424(-) (comGC) [Bacillus subtilis strain SRCM104005]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAACGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment