Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EO082_RS16075 Genome accession   NZ_CP034967
Coordinates   3483141..3484655 (+) Length   504 a.a.
NCBI ID   WP_164537358.1    Uniprot ID   -
Organism   Aeromonas veronii strain ZfB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3478141..3489655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO082_RS16060 (EO082_16110) - 3479905..3480849 (-) 945 WP_164537356.1 branched-chain amino acid transaminase -
  EO082_RS16065 (EO082_16115) ilvM 3480862..3481113 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  EO082_RS16070 (EO082_16120) ilvG 3481110..3482756 (-) 1647 WP_164537357.1 acetolactate synthase 2 catalytic subunit -
  EO082_RS16075 (EO082_16130) comM 3483141..3484655 (+) 1515 WP_164537358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EO082_RS16080 (EO082_16135) - 3484782..3485681 (+) 900 WP_164537359.1 acyltransferase -
  EO082_RS16085 (EO082_16140) - 3485688..3486653 (+) 966 WP_164537360.1 acyltransferase -
  EO082_RS16090 (EO082_16145) - 3486578..3487084 (-) 507 WP_164537361.1 DUF523 domain-containing protein -
  EO082_RS16095 (EO082_16150) - 3487081..3487731 (-) 651 WP_164537362.1 NUDIX hydrolase -
  EO082_RS16100 (EO082_16155) - 3487806..3488441 (+) 636 WP_164537363.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54526.41 Da        Isoelectric Point: 7.4493

>NTDB_id=333771 EO082_RS16075 WP_164537358.1 3483141..3484655(+) (comM) [Aeromonas veronii strain ZfB1]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLESAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=333771 EO082_RS16075 WP_164537358.1 3483141..3484655(+) (comM) [Aeromonas veronii strain ZfB1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAATTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTACCACTGCCAGATCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCTGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCAGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGTAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGGATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGCGAGATAGAGGATATTTGCCGACTATCAGCGCAAGATGCCGAATTTTTGGAGAGTGCTATCCAGAAGC
TGGGGCTCAGTATCCGGGCCTGGCACCGCATACTGCGGGTGTCGCGTACCATCGCAGATCTGGCCGGGCAACCCGCTATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGCTACCGGGCCATGGATCGGCTGCTATCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.75

100

0.611
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462

Multiple sequence alignment