Detailed information NTG0333596

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: FWK48_RS08350
• Genome accession: NZ_CP042987
• Coordinates: 1824726..1825340 (-)
• Length: 204 a.a.
• NCBI ID: WP_136121737.1
• Uniprot ID: -
• Organism: Histophilus somni strain UOC-KLM-ATR-08
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1819726..1830340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK48_RS08330 (FWK48_08330)	putP	1819904..1821418 (+)	1515	WP_136121740.1	sodium/proline symporter PutP	-
FWK48_RS08335 (FWK48_08335)	cmoB	1821421..1822386 (+)	966	WP_136121739.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
FWK48_RS08340 (FWK48_08340)	-	1822386..1823594 (+)	1209	WP_136121738.1	NAD(P)/FAD-dependent oxidoreductase	-
FWK48_RS08345 (FWK48_08345)	ruvB	1823708..1824715 (-)	1008	WP_011608424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FWK48_RS08350 (FWK48_08350)	ruvA	1824726..1825340 (-)	615	WP_136121737.1	Holliday junction branch migration protein RuvA	Machinery gene
FWK48_RS08355 (FWK48_08355)	recC	1825419..1828853 (-)	3435	WP_147603831.1	exodeoxyribonuclease V subunit gamma	-
FWK48_RS08360 (FWK48_08360)	comQ	1828906..1829223 (-)	318	WP_136121735.1	DUF5374 domain-containing protein	Machinery gene
FWK48_RS08365 (FWK48_08365)	comP	1829204..1829884 (-)	681	WP_011608420.1	DUF2572 family protein	Machinery gene

Sequence

Protein

• Length: 204 a.a.
• Molecular weight: 22593.53 Da
• Isoelectric Point: 8.0493

>NTDB_id=333596 FWK48_RS08350 WP_136121737.1 1824726..1825340(-) (ruvA) [Histophilus somni strain UOC-KLM-ATR-08]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFAYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKPDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide

• Length: 615 bp

>NTDB_id=333596 FWK48_RS08350 WP_136121737.1 1824726..1825340(-) (ruvA) [Histophilus somni strain UOC-KLM-ATR-08]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTGGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTCGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGCATATGCAATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACCGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-62)

• Helix-hairpin-helix domain (HHH_5) (72-129)

• RuvA, C-terminal domain (RuvA_C) (161-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	37.321	100	0.382
ruvA	Streptococcus pneumoniae TIGR4	36.275	100	0.363
ruvA	Streptococcus pneumoniae R6	36.275	100	0.363
ruvA	Streptococcus pneumoniae D39	36.275	100	0.363