Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FWK48_RS08365 Genome accession   NZ_CP042987
Coordinates   1829204..1829884 (-) Length   226 a.a.
NCBI ID   WP_011608420.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824204..1834884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS08350 (FWK48_08350) ruvA 1824726..1825340 (-) 615 WP_136121737.1 Holliday junction branch migration protein RuvA Machinery gene
  FWK48_RS08355 (FWK48_08355) recC 1825419..1828853 (-) 3435 WP_147603831.1 exodeoxyribonuclease V subunit gamma -
  FWK48_RS08360 (FWK48_08360) comQ 1828906..1829223 (-) 318 WP_136121735.1 DUF5374 domain-containing protein Machinery gene
  FWK48_RS08365 (FWK48_08365) comP 1829204..1829884 (-) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  FWK48_RS08370 (FWK48_08370) comO 1829887..1830564 (-) 678 WP_136121755.1 type II secretion system protein J Machinery gene
  FWK48_RS08375 (FWK48_08375) comN 1830613..1831140 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK48_RS08395 (FWK48_08395) pal 1831815..1832270 (-) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK48_RS08400 (FWK48_08400) tolB 1832280..1833584 (-) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK48_RS08405 (FWK48_08405) tolA 1833612..1834667 (-) 1056 WP_075320972.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26112.46 Da        Isoelectric Point: 9.7821

>NTDB_id=333598 FWK48_RS08365 WP_011608420.1 1829204..1829884(-) (comP) [Histophilus somni strain UOC-KLM-ATR-08]
MNIQKGVVTLTLLMLLSSVLLILLFFDGDLISLHSSIVSQRKIYLEQSLILQRQSISQKEKLCENQPLNNNLKSLKIEFE
SRRKIDRTSQFIWCERKYLFKKRPKKATYEAGLSQYINLELLDLFQHKLHSPPAILPRDKANYLYWVEEKSAELEIQGNI
NAVVIAEGDLKLTGKGKISGTVITGGKLSIEPAVKIVYRSKTIIDLIRSYSYWQFAENSWYDFQPL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=333598 FWK48_RS08365 WP_011608420.1 1829204..1829884(-) (comP) [Histophilus somni strain UOC-KLM-ATR-08]
ATGAATATACAAAAAGGAGTTGTAACGCTCACCCTATTAATGCTGTTAAGCTCAGTATTATTAATTTTACTTTTTTTTGA
TGGTGATTTGATTTCGTTGCATTCATCCATTGTTTCTCAACGAAAAATATATTTAGAACAAAGTCTTATATTACAGAGAC
AAAGTATTTCTCAAAAAGAAAAACTTTGTGAAAACCAGCCTCTGAATAATAATTTGAAAAGTTTGAAGATCGAATTTGAA
AGTCGACGAAAAATTGACCGCACTTCTCAATTTATATGGTGTGAAAGAAAATATTTGTTTAAAAAAAGGCCGAAAAAAGC
TACTTATGAGGCAGGGCTAAGTCAGTATATAAATCTTGAGTTACTGGATTTATTTCAACATAAATTACATTCACCGCCTG
CTATTTTGCCGAGAGATAAAGCAAATTACCTCTATTGGGTTGAGGAAAAATCAGCTGAATTGGAGATACAAGGTAATATT
AATGCAGTTGTTATTGCTGAAGGGGATTTGAAGTTAACAGGAAAAGGTAAAATTAGTGGAACGGTTATTACCGGCGGGAA
ATTAAGTATTGAACCAGCAGTTAAAATTGTGTATCGCTCAAAAACAATCATCGATCTTATCCGATCATATAGTTATTGGC
AGTTTGCGGAGAATAGTTGGTATGATTTTCAACCATTATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

43.946

98.673

0.434

Multiple sequence alignment