Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FWK48_RS03420 Genome accession   NZ_CP042987
Coordinates   742107..742571 (-) Length   154 a.a.
NCBI ID   WP_011609284.1    Uniprot ID   A0A9Q6Z0H2
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 737107..747571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS03390 (FWK48_03390) focA 737519..738370 (-) 852 WP_075293712.1 formate transporter FocA -
  FWK48_RS03395 (FWK48_03395) hinT 738615..738965 (+) 351 WP_075293713.1 purine nucleoside phosphoramidase -
  FWK48_RS03400 (FWK48_03400) - 738965..739321 (+) 357 WP_136121408.1 YcfL family protein -
  FWK48_RS03405 (FWK48_03405) nagZ 739328..740383 (+) 1056 WP_136121407.1 beta-N-acetylhexosaminidase -
  FWK48_RS03410 (FWK48_03410) - 740403..740921 (+) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  FWK48_RS03415 (FWK48_03415) metF 741137..742021 (+) 885 WP_075293716.1 methylenetetrahydrofolate reductase -
  FWK48_RS03420 (FWK48_03420) ssb 742107..742571 (-) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  FWK48_RS03425 (FWK48_03425) uvrA 742750..745581 (+) 2832 WP_136121406.1 excinuclease ABC subunit UvrA Machinery gene
  FWK48_RS03430 (FWK48_03430) - 745753..746808 (+) 1056 WP_011609282.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17419.34 Da        Isoelectric Point: 5.7904

>NTDB_id=333567 FWK48_RS03420 WP_011609284.1 742107..742571(-) (ssb) [Histophilus somni strain UOC-KLM-ATR-08]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=333567 FWK48_RS03420 WP_011609284.1 742107..742571(-) (ssb) [Histophilus somni strain UOC-KLM-ATR-08]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAGGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z0H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.536

100

0.747
  ssb Vibrio cholerae strain A1552

52.247

100

0.604
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5