Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FWK48_RS03425 Genome accession   NZ_CP042987
Coordinates   742750..745581 (+) Length   943 a.a.
NCBI ID   WP_136121406.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 737750..750581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS03395 (FWK48_03395) hinT 738615..738965 (+) 351 WP_075293713.1 purine nucleoside phosphoramidase -
  FWK48_RS03400 (FWK48_03400) - 738965..739321 (+) 357 WP_136121408.1 YcfL family protein -
  FWK48_RS03405 (FWK48_03405) nagZ 739328..740383 (+) 1056 WP_136121407.1 beta-N-acetylhexosaminidase -
  FWK48_RS03410 (FWK48_03410) - 740403..740921 (+) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  FWK48_RS03415 (FWK48_03415) metF 741137..742021 (+) 885 WP_075293716.1 methylenetetrahydrofolate reductase -
  FWK48_RS03420 (FWK48_03420) ssb 742107..742571 (-) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  FWK48_RS03425 (FWK48_03425) uvrA 742750..745581 (+) 2832 WP_136121406.1 excinuclease ABC subunit UvrA Machinery gene
  FWK48_RS03430 (FWK48_03430) - 745753..746808 (+) 1056 WP_011609282.1 rod shape-determining protein -
  FWK48_RS03435 (FWK48_03435) mreC 746890..747945 (+) 1056 WP_136121405.1 rod shape-determining protein MreC -
  FWK48_RS03440 (FWK48_03440) mreD 747945..748433 (+) 489 WP_136121404.1 rod shape-determining protein MreD -
  FWK48_RS03445 (FWK48_03445) - 748459..749133 (-) 675 WP_136121403.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104316.22 Da        Isoelectric Point: 6.8288

>NTDB_id=333568 FWK48_RS03425 WP_136121406.1 742750..745581(+) (uvrA) [Histophilus somni strain UOC-KLM-ATR-08]
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKMMLLAPVVKNRKG
EHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENS
QVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQM
LMSLAKHYDFDIELPFEKLPKKIQQIILNGSGNEEIEFQYMNDRGDVVLRRHSFEGILNNMARRYKETESMSVREELSKN
ISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDI
GPGAGVHGGNVVAQGNAQEIMANPNSLTGNFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTSIRELFSGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFF
DAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRD
KGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=333568 FWK48_RS03425 WP_136121406.1 742750..745581(+) (uvrA) [Histophilus somni strain UOC-KLM-ATR-08]
ATGGAAAAAATTGATATTCGTGGGGCAAGAACTCACAATCTAAAAAATATAAGTTTAACAATTCCTCGTAACAAACTTGT
TGTAATTACGGGGCTGTCTGGTTCAGGAAAGTCTTCTTTGGCTTTTGATACGTTATATGCAGAGGGGCAACGCCGTTATG
TAGAGTCATTGTCTGCCTACGCTCGCCAATTTTTATCTTTAATGGAAAAACCCGATGTTGATCATATTGAAGGATTATCT
CCGGCTATTTCTATTGAACAAAAATCCACTTCTCATAATCCTCGCTCAACAGTGGGAACGATTACTGAAATTCATGATTA
TTTGCGTTTATTGTTTGCTCGAGTAGGTGAGCCGAGATGCCCAGAACATCATGTTACATTAAGCGTGCAAACTATTAGCC
AAATGGTTGATAAAGTGCTGAGTTTGCCGGAAGAAAGTAAGATGATGTTACTTGCACCGGTGGTCAAAAATCGTAAAGGC
GAGCATATCAAAATTTTAGAAAATATTGCCGCACAAGGCTATATTCGGGCAAGGATTGATGGTGAAATTTGTGATTTATC
GGATCCGCCTAAATTAGAATTACAGAAAAAACATACAATTGAAGTGGTGGTTGATCGCTTTAAAGTGCGGTCTGATTTGG
CTACTCGTTTGGCTGAATCTTTTGAAACAGCGTTAGAGTTGTCCGGTGGGACAGCAATCGTTGCGGATATGGAGAATTCG
CAAGTGGAAGAATTGATTTTTTCCGCTAATTTTGCTTGCCCTCATTGTGGTTATTCTATCCCTGAATTAGAGCCGAGGTT
GTTTTCTTTTAATAATCCTGCTGGTGCTTGTTCTACTTGTGACGGTTTAGGCGTGCAACAATATTTTGATGAAAAACGTG
TTGTACAAAACGCATCGATTTCTTTAGCCGGTGGAGCGATAAAAGGGTGGGATCGGCGTAATTTTTATTATTACCAAATG
TTGATGTCTTTAGCTAAGCACTATGATTTTGATATTGAACTACCTTTTGAAAAGTTACCGAAAAAAATTCAGCAAATTAT
CTTAAACGGTTCAGGTAACGAGGAAATTGAATTTCAATATATGAACGATCGTGGTGATGTTGTTCTTCGCCGTCATAGTT
TTGAGGGGATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGTCTGTACGAGAGGAATTGTCCAAAAAT
ATTAGTAGTCGACCTTGTGTAGATTGTTGCGGTTCGAGATTACGTTCGGAAGCTCGCCATGTTTATATCGGTGAAGCTAA
TTTACCTGATGTATCAGAGAAAAGTATCGGAGAAGCACTCAATTTTATTGATAACCTGACATTGACGGGACAACGTGGGC
AAATTGCAGACAAAATTCTGAAAGAGATTAAAGAGCGGTTACAATTTTTAGTAAATGTGGGGCTGAGTTATTTATCTTTA
TCTCGTTCAGCGGAAACTTTATCCGGTGGAGAAGCACAGCGTATTCGTTTGGCAAGTCAAATTGGTGCAGGACTAGTTGG
AGTAATGTATGTACTTGATGAACCCTCAATCGGTTTACACCAACGAGATAATGAGCGTTTATTAAATACTTTGTTGCATT
TGCGTAATCTAGGCAACACAGTGATTGTGGTTGAACATGATGAAGATGCTATCATGGCAGCTGATCATATTATTGATATT
GGTCCCGGAGCCGGTGTGCATGGAGGAAATGTTGTTGCACAAGGTAATGCACAAGAAATTATGGCTAATCCAAATTCTTT
AACAGGTAACTTCTTGTCAGGTAAGGAAAAAATTGAAATTCCGCTGAAACGAACCGCAGTTGATAAGCAAAAAATGCTTA
GATTAAAAGGAGCAAGCGGTAATAACCTGAAACAGGTGAATTTGGATATTCCCGTTGGTTTATTTACCTGTGTAACAGGT
GTATCCGGTTCGGGAAAATCTACCTTAATCAATGATACTTTATTTCCATTGGCTCAAAATGCGTTAAATCGTGCGGAAAA
TTCCCAGTTTGCACCTTATCAATCAATTGAGGGACTTGAGTTTTTTGACAAAGTGATCGATATAGATCAAAGTCCGATAG
GTAGAACGCCTCGTTCCAATCCTGCAACCTATACAGGGTTATTTACGTCAATTCGTGAGTTATTTTCCGGCGTGCCAGAG
GCTCGAGCGAGAGGTTATAATCCGGGGCGATTCAGTTTTAATGTGCGTGGCGGACGTTGTGAAGCCTGTCAAGGTGATGG
TGTTATCAAGGTTGAAATGCACTTTTTACCTGATGTTTATGTGCCTTGTGATCAATGTAAAGGCAAGCGTTATAATCGAG
AAACCTTGGAAATTCGTTACAAAGGCAAAACTATCCATCAAGTGCTTGATATGACAGTAGAAGAAGCACGAGTGTTTTTT
GATGCTATTCCAATGGTAGCTCGTAAATTACAAACGTTGATTGACGTTGGTTTATCTTATATTCGCTTAGGTCAATCTTC
AACAACCTTGTCTGGAGGAGAAGCACAAAGAGTTAAATTAGCAACAGAGCTTTCTAAACGAGATACAGGGAAGACGTTAT
ACATTTTAGATGAACCGACTACAGGATTACATTTTGCCGATATTAAACAACTCCTGACCGTCTTACATTGTTTACGTGAT
AAGGGAAATACCATAGTGGTAATTGAACATAATCTCGATGTAATAAAAACCGCTGACTGGATCGTTGATTTAGGACCGGA
AGGGGGAAATGGCGGAGGACAAATTATTGCTACCGGCACGCCGGAAGAGGTTTGCCTAGTTGAAGGATCTCATACGGCGA
GATTTTTAAAAACTATGTTGGCTAAAAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.946

100

0.569
  uvrA Streptococcus pneumoniae TIGR4

56.946

100

0.569
  uvrA Streptococcus pneumoniae D39

56.946

100

0.569

Multiple sequence alignment