Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EO763_RS20895 Genome accession   NZ_CP034938
Coordinates   4635368..4636894 (+) Length   508 a.a.
NCBI ID   WP_161530086.1    Uniprot ID   -
Organism   Pectobacterium odoriferum strain JK2.1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4630368..4641894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO763_RS20875 (EO763_21200) - 4631783..4632709 (-) 927 WP_039508688.1 branched-chain amino acid transaminase -
  EO763_RS20880 (EO763_21205) ilvM 4632735..4632995 (-) 261 WP_039492866.1 acetolactate synthase 2 small subunit -
  EO763_RS20885 (EO763_21210) ilvG 4633075..4634721 (-) 1647 WP_161530085.1 acetolactate synthase 2 catalytic subunit -
  EO763_RS20890 (EO763_21215) ilvL 4634862..4634960 (-) 99 WP_071531109.1 ilv operon leader peptide -
  EO763_RS20895 (EO763_21220) comM 4635368..4636894 (+) 1527 WP_161530086.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EO763_RS20900 (EO763_21225) - 4636954..4637292 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  EO763_RS20905 (EO763_21230) hdfR 4637413..4638240 (+) 828 WP_039487968.1 HTH-type transcriptional regulator HdfR -
  EO763_RS20910 (EO763_21235) yjfF 4638262..4639224 (-) 963 WP_161530087.1 galactofuranose ABC transporter, permease protein YjfF -
  EO763_RS20915 (EO763_21240) ytfT 4639224..4640234 (-) 1011 WP_161530088.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  EO763_RS20920 (EO763_21245) ytfR 4640221..4641741 (-) 1521 WP_161530089.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55402.05 Da        Isoelectric Point: 6.8205

>NTDB_id=333540 EO763_RS20895 WP_161530086.1 4635368..4636894(+) (comM) [Pectobacterium odoriferum strain JK2.1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRSPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRG
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=333540 EO763_RS20895 WP_161530086.1 4635368..4636894(+) (comM) [Pectobacterium odoriferum strain JK2.1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGTTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTACCGATTGCTCTGGCGATTCTGGCAGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCACAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGCGGAGAAGAGGAATTGCTCAGTTGTTCCGATATGACGCCCGTTCCACAGATAGGGGA
AGATACGCTCGACTTGAAGGATATCATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGTCATA
ACCTGCTCTTGCTAGGGCCACCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCGCCGTTAAGC
GATGAAGAAGCGTTAGAAAGTGCCGCGATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCAAGGCC
ATTCAGATCACCTCATCATAGTTCTTCCATGGCTGCACTGGTGGGTGGTGGGTCATTACCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGAGTGCTGTTTCTGGATGAATTACCGGAGTTCGAGCGGCGCGTCCTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATCTCTCGCACTCGAGCCAAAGTATGCTACCCAGCACGCGTGCAGCTCGTTGCCGCAATGAA
TCCCAGTCCATCAGGACACTATCAGGGCATTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTTCCTTTGCTACCACCGGGGGTGTTATCTCAGCAACATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAACGCGTGCTGACCGCACGGCAAATACAGTTGAAGCGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGGCCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGTGATCGGGGC
AACATTGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Glaesserella parasuis strain SC1401

63.458

100

0.636
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Vibrio campbellii strain DS40M4

62.451

99.606

0.622
  comM Legionella pneumophila str. Paris

50.501

98.228

0.496
  comM Legionella pneumophila strain ERS1305867

50.501

98.228

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.498

100

0.47

Multiple sequence alignment