Detailed information NTG0333381

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: FWK43_RS09020
• Genome accession: NZ_CP042983
• Coordinates: 1968382..1969050 (-)
• Length: 222 a.a.
• NCBI ID: WP_011608296.1
• Uniprot ID: B0UUW7
• Organism: Histophilus somni strain UOC-KLM-ATR-01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1963382..1974050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK43_RS08985 (FWK43_08985)	-	1963488..1963991 (-)	504	WP_011608302.1	chorismate lyase	-
FWK43_RS08990 (FWK43_08990)	-	1964108..1964770 (-)	663	WP_012340638.1	MOSC domain-containing protein	-
FWK43_RS08995 (FWK43_08995)	ilvM	1964836..1965054 (-)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
FWK43_RS09000 (FWK43_09000)	ilvG	1965058..1966734 (-)	1677	WP_132994587.1	acetolactate synthase 2 catalytic subunit	-
FWK43_RS09005 (FWK43_09005)	mutM	1966826..1967638 (-)	813	WP_011608298.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FWK43_RS09010 (FWK43_09010)	rpmG	1967743..1967913 (-)	171	WP_005542835.1	50S ribosomal protein L33	-
FWK43_RS09015 (FWK43_09015)	rpmB	1967925..1968161 (-)	237	WP_011608297.1	50S ribosomal protein L28	-
FWK43_RS09020 (FWK43_09020)	radC	1968382..1969050 (-)	669	WP_011608296.1	DNA repair protein RadC	Machinery gene
FWK43_RS09025 (FWK43_09025)	coaBC	1969223..1970449 (+)	1227	WP_132994586.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FWK43_RS09030 (FWK43_09030)	dut	1970446..1970901 (+)	456	WP_011608294.1	dUTP diphosphatase	-
FWK43_RS09035 (FWK43_09035)	slmA	1970901..1971560 (+)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
FWK43_RS09040 (FWK43_09040)	-	1971595..1971819 (+)	225	WP_012341336.1	YheU family protein	-
FWK43_RS09045 (FWK43_09045)	crp	1971832..1972476 (+)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
FWK43_RS09050 (FWK43_09050)	recF	1972533..1973609 (-)	1077	WP_132994585.1	DNA replication/repair protein RecF	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25553.76 Da
• Isoelectric Point: 7.3730

>NTDB_id=333381 FWK43_RS09020 WP_011608296.1 1968382..1969050(-) (radC) [Histophilus somni strain UOC-KLM-ATR-01]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

• Length: 669 bp

>NTDB_id=333381 FWK43_RS09020 WP_011608296.1 1968382..1969050(-) (radC) [Histophilus somni strain UOC-KLM-ATR-01]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACAGT
TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACAGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (101-220)

• UPF0758 N-terminal (UPF0758_N) (8-75)

3D structure

• AlphaFold DB: B0UUW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631