Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FWK43_RS08330 Genome accession   NZ_CP042983
Coordinates   1824744..1825358 (-) Length   204 a.a.
NCBI ID   WP_075293664.1    Uniprot ID   A0A9Q6Z0E0
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819744..1830358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS08310 (FWK43_08310) putP 1819922..1821436 (+) 1515 WP_132995098.1 sodium/proline symporter PutP -
  FWK43_RS08315 (FWK43_08315) cmoB 1821439..1822404 (+) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  FWK43_RS08320 (FWK43_08320) - 1822404..1823612 (+) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  FWK43_RS08325 (FWK43_08325) ruvB 1823726..1824733 (-) 1008 WP_011608424.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FWK43_RS08330 (FWK43_08330) ruvA 1824744..1825358 (-) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene
  FWK43_RS08335 (FWK43_08335) recC 1825437..1828871 (-) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  FWK43_RS08340 (FWK43_08340) comQ 1828924..1829241 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  FWK43_RS08345 (FWK43_08345) comP 1829222..1829902 (-) 681 WP_132995094.1 DUF2572 family protein Machinery gene

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22621.59 Da        Isoelectric Point: 8.0493

>NTDB_id=333373 FWK43_RS08330 WP_075293664.1 1824744..1825358(-) (ruvA) [Histophilus somni strain UOC-KLM-ATR-01]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKPDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=333373 FWK43_RS08330 WP_075293664.1 1824744..1825358(-) (ruvA) [Histophilus somni strain UOC-KLM-ATR-01]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTAGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACCGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z0E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368

Multiple sequence alignment