Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FWK43_RS08345 Genome accession   NZ_CP042983
Coordinates   1829222..1829902 (-) Length   226 a.a.
NCBI ID   WP_132995094.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824222..1834902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS08330 (FWK43_08330) ruvA 1824744..1825358 (-) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene
  FWK43_RS08335 (FWK43_08335) recC 1825437..1828871 (-) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  FWK43_RS08340 (FWK43_08340) comQ 1828924..1829241 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  FWK43_RS08345 (FWK43_08345) comP 1829222..1829902 (-) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  FWK43_RS08350 (FWK43_08350) comO 1829905..1830582 (-) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  FWK43_RS08355 (FWK43_08355) comN 1830631..1831158 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK43_RS08375 (FWK43_08375) pal 1831832..1832287 (-) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK43_RS08380 (FWK43_08380) tolB 1832297..1833601 (-) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK43_RS08385 (FWK43_08385) tolA 1833629..1834684 (-) 1056 WP_075320972.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26225.62 Da        Isoelectric Point: 9.8843

>NTDB_id=333375 FWK43_RS08345 WP_132995094.1 1829222..1829902(-) (comP) [Histophilus somni strain UOC-KLM-ATR-01]
MNIQKGVVTLTLLMLLSSVLLILLFFDGDLISLHSSIVSQRKIYLEQSLILQRQSISQKEKLCENQPLNNNLKSLKIEFE
SRRKIDRTSQFVWCERKYLFKKRPKKATYEARLSQYINLELLDLFQHKLHSPPAILPRDKVNYLYWVEEKSAELEIQGNI
NAVVIAEGDLKLTGKGKISGTVITGGKLSIEPAVKIVYRSKTIIDLIRSYSYWQFAENSWYDFQPL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=333375 FWK43_RS08345 WP_132995094.1 1829222..1829902(-) (comP) [Histophilus somni strain UOC-KLM-ATR-01]
ATGAATATACAAAAAGGAGTTGTAACGCTCACCCTATTAATGCTGTTAAGCTCAGTATTATTAATTTTACTTTTTTTTGA
TGGTGATTTGATTTCGTTGCATTCATCCATTGTTTCTCAACGGAAAATATATTTAGAACAAAGTCTTATATTACAGAGAC
AAAGTATTTCTCAAAAAGAAAAACTTTGTGAAAACCAGCCTCTGAATAATAATTTGAAAAGTTTGAAGATCGAATTTGAA
AGTCGACGAAAAATTGACCGCACTTCTCAATTTGTATGGTGTGAAAGAAAATATTTGTTTAAAAAAAGGCCGAAAAAAGC
TACTTATGAGGCAAGGCTAAGTCAGTATATAAATCTTGAGTTACTGGACTTATTTCAACATAAATTACATTCACCGCCTG
CTATTTTGCCGAGAGATAAAGTAAATTACCTCTATTGGGTTGAGGAAAAATCAGCTGAATTGGAGATACAAGGTAATATT
AATGCAGTTGTTATTGCTGAAGGGGATTTGAAGTTAACAGGAAAAGGTAAAATTAGTGGAACGGTTATTACCGGCGGGAA
ATTAAGTATTGAACCAGCAGTTAAAATTGTGTATCGCTCAAAAACAATCATCGATCTTATCCGATCATATAGTTATTGGC
AGTTTGCGGAGAATAGTTGGTATGATTTTCAACCATTATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

43.946

98.673

0.434