Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FWK43_RS08350 Genome accession   NZ_CP042983
Coordinates   1829905..1830582 (-) Length   225 a.a.
NCBI ID   WP_011608419.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824905..1835582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS08335 (FWK43_08335) recC 1825437..1828871 (-) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  FWK43_RS08340 (FWK43_08340) comQ 1828924..1829241 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  FWK43_RS08345 (FWK43_08345) comP 1829222..1829902 (-) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  FWK43_RS08350 (FWK43_08350) comO 1829905..1830582 (-) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  FWK43_RS08355 (FWK43_08355) comN 1830631..1831158 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK43_RS08375 (FWK43_08375) pal 1831832..1832287 (-) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK43_RS08380 (FWK43_08380) tolB 1832297..1833601 (-) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK43_RS08385 (FWK43_08385) tolA 1833629..1834684 (-) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  FWK43_RS08390 (FWK43_08390) tolR 1834703..1835125 (-) 423 WP_011608414.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25839.55 Da        Isoelectric Point: 8.6697

>NTDB_id=333376 FWK43_RS08350 WP_011608419.1 1829905..1830582(-) (comO) [Histophilus somni strain UOC-KLM-ATR-01]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFEQDKSGKSIVV
AQADNEPPNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFNWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=333376 FWK43_RS08350 WP_011608419.1 1829905..1830582(-) (comO) [Histophilus somni strain UOC-KLM-ATR-01]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGAACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCCCCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGTGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGGTGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TAATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCTATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.196

92.889

0.476