Detailed information NTG0333372

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: FWK43_RS08325
• Genome accession: NZ_CP042983
• Coordinates: 1823726..1824733 (-)
• Length: 335 a.a.
• NCBI ID: WP_011608424.1
• Uniprot ID: B0UVK4
• Organism: Histophilus somni strain UOC-KLM-ATR-01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1818726..1829733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK43_RS08310 (FWK43_08310)	putP	1819922..1821436 (+)	1515	WP_132995098.1	sodium/proline symporter PutP	-
FWK43_RS08315 (FWK43_08315)	cmoB	1821439..1822404 (+)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
FWK43_RS08320 (FWK43_08320)	-	1822404..1823612 (+)	1209	WP_012340582.1	NAD(P)/FAD-dependent oxidoreductase	-
FWK43_RS08325 (FWK43_08325)	ruvB	1823726..1824733 (-)	1008	WP_011608424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FWK43_RS08330 (FWK43_08330)	ruvA	1824744..1825358 (-)	615	WP_075293664.1	Holliday junction branch migration protein RuvA	Machinery gene
FWK43_RS08335 (FWK43_08335)	recC	1825437..1828871 (-)	3435	WP_132995096.1	exodeoxyribonuclease V subunit gamma	-
FWK43_RS08340 (FWK43_08340)	comQ	1828924..1829241 (-)	318	WP_012340547.1	DUF5374 domain-containing protein	Machinery gene

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37249.83 Da
• Isoelectric Point: 4.7362

>NTDB_id=333372 FWK43_RS08325 WP_011608424.1 1823726..1824733(-) (ruvB) [Histophilus somni strain UOC-KLM-ATR-01]
MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG
KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYRHFGLEQIEK

Nucleotide

• Length: 1008 bp

>NTDB_id=333372 FWK43_RS08325 WP_011608424.1 1823726..1824733(-) (ruvB) [Histophilus somni strain UOC-KLM-ATR-01]
ATGATTGAAGTAGATCGCATTGTAAGTGCCAATGCAAAAGTAGACGATGAATATATTGATCGTGCAATTCGCCCTAAATT
ATTGAGTGATTATATCGGTCAACCTCAAGTTAGAGAGCAAATGGAAATTTTCATCCAAGCAGCAAAATTACGCCAAGATG
CACTTGATCATTTGTTAATTTTTGGACCCCCTGGACTAGGAAAAACAACGTTGGCGAATATTGTTGCCAATGAAATGGGA
GTGAATATTCGTACTACTTCAGGTCCGGTTTTAGAAAAAGCGGGGGATTTAGCGGCAATGCTAACGAACCTTGAACCTCA
TGATGTATTATTCATTGATGAAATTCATCGCTTATCACCAGCTATTGAGGAAGTTCTTTATCCGGCGATGGAAGATTATC
AACTGGATATTATGATTGGAGAAGGTCCTGCTGCCCGTTCAATAAAGCTGGATTTACCGCCTTTTACGCTGATTGGAGCA
ACAACAAGAGCAGGCTCTTTGACTTCTCCATTACGAGATCGATTCGGTATTGTGCAGCGACTGGAGTTTTATTCTGTAGA
GGATTTAGCTTCCATTGTTACTCGAAGTGCGGTCTGTTTGCAGCTTGAAATTGATGTTGAAGCAGGACAAGAAATTGCTT
GTCGTTCACGAGGTACCCCACGTATTGCAAATCGCCTATTACGCCGAGTGCGAGATTATGCCGATGTCAAAAATGGTGGG
AAAATTACCGCACTTATTGCTCAAGAAGCACTGAAGATGCTGGATGTGGATCTTGCAGGATTTGATTTTATGGATCGTAA
ATTATTACAGGCAATTATTGAGCGGTTTGATGGCGGACCTGTAGGATTGGATAATTTGGCGGCGGCAATTGGCGAAGAGC
GAGATACTATTGAAGATGTACTGGAGCCTTATTTAATTCAGCAAGGATTTTTACAACGGACACCTCGTGGAAGAATAGCA
ACATCAAGAACTTATCGACATTTTGGTTTGGAACAGATTGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: B0UVK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	63.609	97.612	0.621
ruvB	Streptococcus pneumoniae TIGR4	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae R6	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae D39	58.133	99.104	0.576
ruvB	Synechocystis sp. PCC 6803	55.732	93.731	0.522
ruvB	Helicobacter pylori 26695	57.237	90.746	0.519