Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELR70_RS06670 Genome accession   NZ_CP034835
Coordinates   391603..393120 (+) Length   505 a.a.
NCBI ID   WP_054014248.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. R3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 386603..398120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR70_RS06665 (ELR70_06665) - 390974..391588 (+) 615 WP_054014247.1 trimeric intracellular cation channel family protein -
  ELR70_RS06670 (ELR70_06670) comM 391603..393120 (+) 1518 WP_054014248.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELR70_RS06675 (ELR70_06675) - 393127..393831 (-) 705 WP_054014249.1 response regulator transcription factor -
  ELR70_RS06680 (ELR70_06680) - 394042..396495 (-) 2454 WP_054014250.1 prolyl oligopeptidase family serine peptidase -
  ELR70_RS06685 (ELR70_06685) - 396585..397793 (-) 1209 WP_054014251.1 EAL domain-containing response regulator -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55628.90 Da        Isoelectric Point: 7.9187

>NTDB_id=333309 ELR70_RS06670 WP_054014248.1 391603..393120(+) (comM) [Pseudoalteromonas sp. R3]
MSLARILTRAQVGIESPVVTVEVHLSNGLPSFNIVGLPETSVKESKERVRSALHNSRFVFPEQRITVNLAPADLPKQGGR
YDLAIAIGILVASGQLNEQTTQGCEFYGELALNGEIRPVTAIIPVVMAAKNERHKCYIPEPNVAMAQLVEYEHCVAADTL
QRLWLDLSGQAQLPLIDYTTATPSDSPNLCFMDMSDVKGQPMAKRALEIAAAGGHNILFLGPPGTGKSMLAQRMPGIMPK
MNVEQALQTAAVYSLTGKQLDHHNWRNRPFRAPHHTCSAVALVGGSSNPKPGEISLAHNGILFLDELPEYERKVLDSLRE
PMETGVVTISRAAQQVDFPASFQLIAALNPSPTGCHTDKRASPDQVLRYLSKISGPFVDRIDLQIELPRLSTQELQSTRQ
EVPSEVIRCRVEAAFEIALKRQNKANARLSTREIEQHCALAPDVAQLLARATEKLNLSPRSYHRIIKVARTVADLAQRRD
ITVPDLKEALSYRAFERLLGQLTYS

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=333309 ELR70_RS06670 WP_054014248.1 391603..393120(+) (comM) [Pseudoalteromonas sp. R3]
ATGTCATTAGCGAGAATACTCACACGAGCTCAGGTTGGTATTGAATCTCCTGTTGTAACAGTCGAAGTACACCTTAGCAA
TGGGCTACCGAGTTTTAATATTGTAGGTTTGCCCGAAACATCGGTTAAAGAATCAAAAGAGCGCGTGCGTTCCGCATTAC
ATAATTCGCGATTTGTATTTCCTGAGCAACGTATCACTGTAAATCTGGCCCCGGCCGATCTGCCAAAACAGGGGGGACGG
TACGATCTGGCGATTGCCATCGGTATTTTAGTGGCATCGGGGCAGCTCAATGAGCAAACAACGCAAGGTTGCGAGTTTTA
CGGTGAATTAGCACTTAATGGTGAAATTAGACCTGTTACTGCAATTATTCCCGTTGTGATGGCTGCAAAAAATGAGCGGC
ACAAGTGCTACATCCCAGAACCAAATGTCGCTATGGCTCAGCTGGTAGAGTATGAGCACTGCGTCGCTGCTGATACACTC
CAAAGGCTTTGGTTAGACCTAAGTGGTCAGGCTCAATTACCTCTAATTGATTATACTACGGCAACACCTTCTGACAGCCC
AAACTTGTGCTTTATGGATATGAGTGATGTTAAAGGACAACCAATGGCGAAGCGGGCGCTCGAAATTGCGGCTGCTGGCG
GACACAATATTTTATTTCTTGGCCCTCCAGGTACGGGCAAGTCTATGTTGGCCCAGAGAATGCCGGGTATTATGCCAAAA
ATGAATGTAGAGCAAGCGCTGCAAACTGCGGCGGTTTACTCTTTGACTGGCAAGCAGTTGGATCATCACAATTGGCGTAA
CAGGCCTTTTCGTGCGCCCCACCATACTTGTTCAGCTGTTGCTTTAGTTGGGGGATCTTCAAATCCCAAGCCCGGAGAAA
TATCTTTAGCACACAATGGAATTCTGTTTTTGGATGAACTACCAGAGTACGAGCGAAAGGTACTGGACTCATTGAGAGAG
CCAATGGAAACGGGGGTAGTAACGATTTCACGTGCTGCACAACAGGTCGACTTTCCTGCTTCATTTCAGTTGATAGCCGC
ACTTAATCCGAGCCCCACGGGTTGTCACACAGATAAAAGAGCTTCACCTGATCAGGTGTTGAGATACCTGAGTAAGATAT
CAGGCCCTTTCGTTGACCGTATCGATTTGCAAATTGAATTGCCCCGCTTAAGTACGCAGGAGCTGCAATCAACAAGGCAA
GAAGTACCAAGTGAAGTGATCCGCTGTAGGGTAGAGGCTGCATTTGAAATTGCCCTGAAACGACAGAATAAAGCCAATGC
CAGACTCTCGACGCGGGAAATAGAACAACACTGTGCACTTGCCCCAGATGTTGCTCAGCTGCTTGCCAGGGCCACAGAGA
AGCTCAACCTATCTCCGCGGTCCTATCATCGTATTATCAAGGTTGCCAGAACGGTTGCGGATTTGGCACAACGCAGAGAT
ATTACAGTACCTGACTTGAAAGAAGCACTCAGCTATCGAGCATTTGAGCGACTATTGGGACAATTGACTTACAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.438

100

0.547
  comM Haemophilus influenzae Rd KW20

52.756

100

0.531
  comM Glaesserella parasuis strain SC1401

52.569

100

0.527
  comM Vibrio campbellii strain DS40M4

52.569

100

0.527
  comM Legionella pneumophila str. Paris

48.898

98.812

0.483
  comM Legionella pneumophila strain ERS1305867

48.898

98.812

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.168

100

0.432

Multiple sequence alignment