Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELQ88_RS34000 Genome accession   NZ_CP034783
Coordinates   6833821..6835314 (+) Length   497 a.a.
NCBI ID   WP_138969473.1    Uniprot ID   A0A5B7W884
Organism   Pseudomonas sp. MPC6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6828821..6840314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS33975 (ELQ88_33980) - 6829008..6830345 (-) 1338 WP_128872541.1 ammonium transporter -
  ELQ88_RS33980 (ELQ88_33985) glnK 6830381..6830719 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ELQ88_RS33985 (ELQ88_33990) - 6831134..6831394 (+) 261 WP_138969471.1 accessory factor UbiK family protein -
  ELQ88_RS33990 (ELQ88_33995) - 6831839..6832360 (+) 522 WP_138969472.1 Bro-N domain-containing protein -
  ELQ88_RS33995 (ELQ88_34000) - 6832366..6832629 (-) 264 WP_128872538.1 HigA family addiction module antitoxin -
  ELQ88_RS34415 - 6832822..6832992 (+) 171 WP_178084731.1 hypothetical protein -
  ELQ88_RS34000 (ELQ88_34005) comM 6833821..6835314 (+) 1494 WP_138969473.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELQ88_RS34005 (ELQ88_34010) - 6835320..6836534 (-) 1215 WP_138969474.1 aldose 1-epimerase family protein -
  ELQ88_RS34010 (ELQ88_34015) - 6836610..6837530 (-) 921 WP_128872535.1 LysR substrate-binding domain-containing protein -
  ELQ88_RS34015 (ELQ88_34020) - 6837689..6839086 (+) 1398 WP_138969475.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53179.15 Da        Isoelectric Point: 8.0590

>NTDB_id=333011 ELQ88_RS34000 WP_138969473.1 6833821..6835314(+) (comM) [Pseudomonas sp. MPC6]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPETAVRESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIEPYVSDGLMHASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALTPSSKP
GDDTATAAARVADARERQHKRQGCANAFLDLQGLRRHCKLSTADENWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPTTH

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=333011 ELQ88_RS34000 WP_138969473.1 6833821..6835314(+) (comM) [Pseudomonas sp. MPC6]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCACCCGCCGTCACCGTGGAAGTCCATCTGGCCAA
CGGTTTACCTTCGCTGACGATGGTCGGCTTGCCCGAAACAGCCGTAAGGGAAAGCAAGGACAGGGTTCGCAGCGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGGCGTATCACGTTGAATCTGGCTCCCGCCGATTTGCCAAAGGACGGCGGGCGG
TTCGATCTGGCGATTGCCCTGGGGATCCTGTCGGCCAGTGTCCAGGTGCCGACCTTGACGCTGGACGATGTGGAATGCCT
AGGGGAGTTGGCGCTGTCCGGTGCAGTGCGAGCCGTGCGTGGTGTGTTGCCGGCGGCACTGGCCGCGCGCAAGGCGGGAC
GGACATTGCTGGTGCCGCGGGCCAATGCCGAAGAGGCGTGCCTGGCGTCGGGGTTGAAGGTGATTGCGGTGGATCATCTG
CTGGAAGCCGTTGCGCATTTCAATGGTCATACGCCCATCGAGCCTTACGTCTCGGATGGCTTGATGCATGCCAGCAAACC
CTATCCCGACTTGAATGAAGTACAGGGCCAACTCGCGGCCAAGCGAGCGTTGCTGATTGCGGCGGCGGGCGCGCATAACC
TGCTGTTCAGCGGGCCACCGGGAACGGGGAAGACCCTACTGGCGAGTCGTCTGCCGGGGTTGTTACCGCCATTGGCAGAA
AGCGAGGCGCTGGAAGTTGCGGCGATTCAATCGGTCACCAGTTGTGTGCCGTTGAGCCATTGGCCGCAGCGACCGTTTCG
CCAACCCCATCACTCCGCTTCCGGGCCGGCACTGGTGGGTGGCGGCTCGAAACCTCAACCCGGTGAGATCACCCTTGCCC
ACCATGGCGTGCTGTTCCTCGATGAACTCCCGGAATTTGACCGCAAAGTATTGGAGGTATTGAGGGAGCCACTGGAATCC
GGCCACATCGTGATCTCCCGCGCCAGGGACCGCGTACGCTTTCCGGCGCGTTTTCAGTTGGTCGCAGCGATGAATCCTTG
CCCCTGTGGATATCTTGGCGAACCGAGTGGTCGCTGTTCCTGCACACCGGACATGGTCCAGCGTTATCGCAACAAGCTGT
CGGGTCCGTTACTGGATCGTATCGACCTGCACCTGACCGTCGCACGGGAGGCCACGGCGCTGACCCCCTCGTCGAAGCCC
GGCGATGACACGGCGACTGCCGCCGCGAGGGTTGCCGATGCCAGGGAGCGGCAACATAAACGCCAAGGCTGCGCCAATGC
CTTCCTCGACCTGCAAGGCCTGCGCCGGCACTGCAAGTTATCCACAGCCGATGAAAACTGGCTGGAATCCGCCTGCGAGC
GCTTGACCCTGTCGTTGCGGGCGGCCCATCGACTGCTCAAGGTAGCGCGCACCCTGGCGGACCTTGAGCAAGTTGATGGC
ATCACCCGTGAACATCTGGCTGAGGCGCTGCAGTACCGGCCAACCACTCACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7W884

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

50

100

0.505
  comM Legionella pneumophila strain ERS1305867

50

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45

100

0.453

Multiple sequence alignment