Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELQ88_RS04450 Genome accession   NZ_CP034783
Coordinates   533105..534169 (+) Length   354 a.a.
NCBI ID   WP_138963855.1    Uniprot ID   A0A5B7VTF3
Organism   Pseudomonas sp. MPC6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528105..539169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS04440 (ELQ88_04440) - 528929..530197 (+) 1269 WP_030129218.1 malic enzyme-like NAD(P)-binding protein -
  ELQ88_RS04445 (ELQ88_04445) - 530445..532892 (-) 2448 WP_138963853.1 penicillin-binding protein 1A -
  ELQ88_RS04450 (ELQ88_04450) comM 533105..534169 (+) 1065 WP_138963855.1 pilus assembly protein PilM Machinery gene
  ELQ88_RS04455 (ELQ88_04455) - 534169..534732 (+) 564 WP_128872934.1 PilN domain-containing protein -
  ELQ88_RS04460 (ELQ88_04460) pilO 534729..535352 (+) 624 WP_138963857.1 type 4a pilus biogenesis protein PilO -
  ELQ88_RS04465 (ELQ88_04465) - 535349..535876 (+) 528 WP_138963859.1 pilus assembly protein PilP -
  ELQ88_RS04470 (ELQ88_04470) pilQ 535890..537968 (+) 2079 WP_138963861.1 type IV pilus secretin PilQ Machinery gene
  ELQ88_RS04475 (ELQ88_04475) aroK 537973..538491 (+) 519 WP_128872930.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38066.54 Da        Isoelectric Point: 4.8939

>NTDB_id=332985 ELQ88_RS04450 WP_138963855.1 533105..534169(+) (comM) [Pseudomonas sp. MPC6]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPPSAVVEKNIAELEGVGQALARVLLKAKTSLRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSARSPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSYGLLTRHMAASQAGLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVSGLDRLIEQRLGTPTQVANP
FSDMSLSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=332985 ELQ88_RS04450 WP_138963855.1 533105..534169(+) (comM) [Pseudomonas sp. MPC6]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGCTGCTGGGGATCGACATCAGTTCCACGTCGGTCAAGCTTCTGGAATT
GAGCCGCCAGGGTGATCGCTACCGGGTCGAGGCCTATGCGGTCGAACCGCTGCCCCCCAGTGCGGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTGGGTCAGGCCCTCGCACGCGTGCTGCTCAAGGCCAAGACCAGCCTCAGGAACGTCGCCGTG
GCCGTGGCCGGTTCGGCAGTGATCACCAAGACCATCGAGATGGATGCCGGTCTTTCCGACGACGAGATGGAAAACCAGCT
GAAGATCGAGGCCGATCAATACATCCCTTATCCATTGGACGAAGTCGCGATCGACTTTGAAGTCCAGGGCGTGTCGGCGC
GCAGCCCCGAGCGGGTCAATGTGCTGCTGGCGGCTTGTCGCAAGGAGAACGTCGAAGTCCGTGAAGCGGCCTTGGCGCTG
GCCGGCCTGACCGCTCGGGTGGTCGACGTCGAGGCCTACGCGCTGGAGCGATCGTACGGCCTGCTGACGCGTCATATGGC
GGCCTCCCAGGCGGGGCTGACGGTGGCGGTGGTCGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCACAATGGGC
GCATCATCTACACCCGCGAGCAATTGTTCGGCGGTCGCCAGCTGACGGAAGAAATCCAGCGACGATATGGCTTGACCCTC
GAGCAGGCAGGGCTGGCGAAGAAACAGGGCGGCCTGCCGGACGACTACGTCAGCGAGGTCCTGCAGCCATTTCGCGAGGC
GCTGGTGCAGCAGGTGTCCCGCTCGTTACAGTTTTTCTTCGCCTCCGGTCAGTACAACTCGGTCGATCACATTCTGCTGG
CCGGCGGTACCGCGTCGGTCTCGGGGCTGGACCGGTTGATCGAGCAGCGACTGGGCACCCCCACGCAAGTGGCCAACCCC
TTCTCCGATATGAGCCTGAGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGTGATGCCCCGGCACTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7VTF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.65

100

0.557
  pilM Acinetobacter baumannii D1279779

55.367

100

0.554
  comM Acinetobacter baylyi ADP1

53.933

100

0.542
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489

Multiple sequence alignment