Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA899_RS00275 Genome accession   NZ_CP042903
Coordinates   56461..56946 (-) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061761     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 51461..61946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA899_RS00250 - 51823..51978 (+) 156 WP_000074142.1 hypothetical protein -
  CA899_RS00255 (CA899_000255) - 52027..52482 (+) 456 Protein_50 hypothetical protein -
  CA899_RS00260 (CA899_000260) - 52518..53731 (+) 1214 WP_085950468.1 IS3-like element ISEc31 family transposase -
  CA899_RS00265 - 53883..54050 (+) 168 WP_001300931.1 hypothetical protein -
  CA899_RS00270 (CA899_000265) trbC 54086..56407 (-) 2322 WP_083582912.1 F-type conjugative transfer protein TrbC -
  CA899_RS00275 (CA899_000270) ssb 56461..56946 (-) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  CA899_RS24510 ykgR 57312..57413 (-) 102 WP_349802906.1 small membrane protein YkgR -
  CA899_RS00280 (CA899_000275) - 57594..59975 (-) 2382 WP_001313395.1 glycoside hydrolase family 31 protein -
  CA899_RS00285 (CA899_000280) - 59990..61291 (-) 1302 WP_001329026.1 MFS transporter -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=332935 CA899_RS00275 WP_000157061.1 56461..56946(-) (ssb) [Escherichia coli strain CFSAN061761]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=332935 CA899_RS00275 WP_000157061.1 56461..56946(-) (ssb) [Escherichia coli strain CFSAN061761]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36