Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SPP_RS11315 Genome accession   NC_012467
Coordinates   2109869..2111050 (+) Length   393 a.a.
NCBI ID   WP_000681603.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   degrading CSP; selective degradation of ComEA and ComEC (predicted from homology)   
Competence regulation

Genomic Context


Location: 2104869..2116050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS11275 (SPP_2287) - 2105920..2106462 (+) 543 WP_001158266.1 TetR/AcrR family transcriptional regulator -
  SPP_RS11290 (SPP_2290) comE 2106705..2107457 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  SPP_RS11295 (SPP_2291) comD/comD1 2107454..2108779 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  SPP_RS11300 (SPP_2292) comC/comC1 2108800..2108925 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  SPP_RS11310 (SPP_2294) rlmH 2109207..2109686 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SPP_RS11315 (SPP_2295) htrA 2109869..2111050 (+) 1182 WP_000681603.1 S1C family serine protease Regulator
  SPP_RS11320 (SPP_2296) spo0J 2111108..2111866 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41840.78 Da        Isoelectric Point: 8.2517

>NTDB_id=33279 SPP_RS11315 WP_000681603.1 2109869..2111050(+) (htrA) [Streptococcus pneumoniae P1031]
MKHLKTFYKKWFQLLVVIVISFFSGALGSFSITQLTQKSSVNNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDDTDTDSQRISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGKIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVI
VRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=33279 SPP_RS11315 WP_000681603.1 2109869..2111050(+) (htrA) [Streptococcus pneumoniae P1031]
ATGAAACATCTAAAAACATTTTACAAAAAATGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAACTCAACTAACTCAAAAAAGTAGTGTAAACAACTCTAACAACAATAGTACTATTACACAAACTG
CCTATAAGAACGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCTGTTATTACTTATTCGGCA
AACAGACAAAATAGCGTATTTGGCAATGATGATACTGACACAGATTCTCAGCGAATCTCTAGTGAAGGATCTGGAGTTAT
TTATAAAAAGAATGATAAAGAAGCTTACATCGTCACCAACAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTCGAT
TGTCAGATGGGACTAAAGTACCTGGAAAAATTGTCGGAGCTGACACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGTAAGTTAACTGTAGGAGAAACTGCTATTGCCATCGGTAGCCC
GTTAGGTTCTGAATATGCAAATACTGTCACTCAAGGTATCGTATCCAGTCTCAATAGAAATGTATCCTTAAAATCGGAAG
ATGGACAAGCTATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGCGGCCCACTGATCAAT
ATTCAAGGGCAGGTTATCGGAATTACCTCAAGTAAAATTGCTACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTCGC
AATTCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAAAACGGAAAAGTGACGCGTCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATGTGAGTACAAGCGACATCAGAAGACTCAATATTCCAAGTAATGTTACATCTGGTGTAATT
GTTCGTTCGGTACAAAGTAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTAATTACAAAAGTAGATGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAACCATTCTATCGGAGACACCATTAAGATAACCTACTATCGTA
ACGGGAAAGAAGAAACTACCTCTATCAAACTTAACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus pneumoniae Rx1

99.746

100

0.997

  htrA Streptococcus pneumoniae D39

99.746

100

0.997

  htrA Streptococcus pneumoniae R6

99.746

100

0.997

  htrA Streptococcus pneumoniae TIGR4

99.746

100

0.997

  htrA Streptococcus mitis NCTC 12261

96.947

100

0.969

  htrA Streptococcus gordonii str. Challis substr. CH1

66.162

100

0.667

  htrA Streptococcus mutans UA159

54.822

100

0.55


Multiple sequence alignment