Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HICON_RS04765 Genome accession   NC_014922
Coordinates   937968..938975 (+) Length   335 a.a.
NCBI ID   WP_006996173.1    Uniprot ID   A0ABY1VTF1
Organism   Haemophilus influenzae F3047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 932968..943975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS04740 (HICON_11590) aspS 933500..935266 (+) 1767 WP_013527496.1 aspartate--tRNA ligase -
  HICON_RS04745 (HICON_11600) nudB 935288..935764 (+) 477 WP_006996169.1 dihydroneopterin triphosphate diphosphatase -
  HICON_RS04750 (HICON_11610) - 935924..936664 (+) 741 WP_005645263.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HICON_RS04755 (HICON_11620) ruvC 936711..937283 (+) 573 WP_006996171.1 crossover junction endodeoxyribonuclease RuvC -
  HICON_RS04760 (HICON_11630) ruvA 937346..937960 (+) 615 WP_013527497.1 Holliday junction branch migration protein RuvA Machinery gene
  HICON_RS04765 (HICON_11640) ruvB 937968..938975 (+) 1008 WP_006996173.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HICON_RS04770 (HICON_11650) - 939027..939314 (-) 288 WP_006996174.1 DUF5339 domain-containing protein -
  HICON_RS04775 (HICON_11660) xerD 939440..940333 (-) 894 WP_006996175.1 site-specific tyrosine recombinase XerD -
  HICON_RS04780 (HICON_11670) - 940364..941530 (-) 1167 WP_006996176.1 3-phenylpropionate MFS transporter -
  HICON_RS04785 (HICON_11680) proC 941530..942345 (-) 816 WP_006996177.1 pyrroline-5-carboxylate reductase -
  HICON_RS04790 (HICON_11690) rdgC 942411..943319 (+) 909 WP_006996178.1 recombination-associated protein RdgC -
  HICON_RS04795 (HICON_11700) ruvX 943369..943788 (-) 420 WP_005648994.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37049.34 Da        Isoelectric Point: 4.7206

>NTDB_id=33274 HICON_RS04765 WP_006996173.1 937968..938975(+) (ruvB) [Haemophilus influenzae F3047]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=33274 HICON_RS04765 WP_006996173.1 937968..938975(+) (ruvB) [Haemophilus influenzae F3047]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTGCGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTTACTAATCTTGAACCGCA
CGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTACCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTGCGTAATGGGGGT
GTAATTTCTGTAGATGTGGCAAAACAAGCGCTTTCAATGCTGGATGTCGATGATGCCGGATTTGATTATTTGGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGGCCTGTGGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCGAGAGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.691

97.612

0.612
  ruvB Streptococcus pneumoniae TIGR4

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae R6

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae D39

58.282

97.313

0.567
  ruvB Helicobacter pylori 26695

54.313

93.433

0.507
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment