Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HICON_RS04760 Genome accession   NC_014922
Coordinates   937346..937960 (+) Length   204 a.a.
NCBI ID   WP_013527497.1    Uniprot ID   -
Organism   Haemophilus influenzae F3047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 932346..942960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS04735 (HICON_11580) - 932763..933281 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  HICON_RS04740 (HICON_11590) aspS 933500..935266 (+) 1767 WP_013527496.1 aspartate--tRNA ligase -
  HICON_RS04745 (HICON_11600) nudB 935288..935764 (+) 477 WP_006996169.1 dihydroneopterin triphosphate diphosphatase -
  HICON_RS04750 (HICON_11610) - 935924..936664 (+) 741 WP_005645263.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HICON_RS04755 (HICON_11620) ruvC 936711..937283 (+) 573 WP_006996171.1 crossover junction endodeoxyribonuclease RuvC -
  HICON_RS04760 (HICON_11630) ruvA 937346..937960 (+) 615 WP_013527497.1 Holliday junction branch migration protein RuvA Machinery gene
  HICON_RS04765 (HICON_11640) ruvB 937968..938975 (+) 1008 WP_006996173.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HICON_RS04770 (HICON_11650) - 939027..939314 (-) 288 WP_006996174.1 DUF5339 domain-containing protein -
  HICON_RS04775 (HICON_11660) xerD 939440..940333 (-) 894 WP_006996175.1 site-specific tyrosine recombinase XerD -
  HICON_RS04780 (HICON_11670) - 940364..941530 (-) 1167 WP_006996176.1 3-phenylpropionate MFS transporter -
  HICON_RS04785 (HICON_11680) proC 941530..942345 (-) 816 WP_006996177.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=33273 HICON_RS04760 WP_013527497.1 937346..937960(+) (ruvA) [Haemophilus influenzae F3047]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVVKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=33273 HICON_RS04760 WP_013527497.1 937346..937960(+) (ruvA) [Haemophilus influenzae F3047]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCTTACGCAATTGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTAATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGTTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment