Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELR50_RS19030 Genome accession   NZ_CP034688
Coordinates   4259134..4260621 (-) Length   495 a.a.
NCBI ID   WP_269962067.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain WXP-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4254134..4265621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS19010 (ELR50_18935) - 4255052..4256104 (+) 1053 WP_269962065.1 haloacid dehalogenase-like hydrolase -
  ELR50_RS19015 (ELR50_18940) - 4256127..4256939 (-) 813 WP_269962066.1 TlpA family protein disulfide reductase -
  ELR50_RS19020 (ELR50_18945) - 4257274..4258725 (-) 1452 WP_043268158.1 PLP-dependent aminotransferase family protein -
  ELR50_RS19025 (ELR50_18950) - 4258900..4259130 (+) 231 WP_058488049.1 DUF1127 domain-containing protein -
  ELR50_RS19030 (ELR50_18955) comM 4259134..4260621 (-) 1488 WP_269962067.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELR50_RS19035 (ELR50_18960) - 4260807..4261073 (-) 267 WP_009614069.1 accessory factor UbiK family protein -
  ELR50_RS19040 (ELR50_18965) - 4261166..4263196 (-) 2031 WP_269962068.1 acyltransferase family protein -
  ELR50_RS19045 (ELR50_18970) glnK 4263740..4264078 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  ELR50_RS19050 (ELR50_18975) - 4264114..4265448 (+) 1335 WP_269962069.1 ammonium transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52202.85 Da        Isoelectric Point: 7.7889

>NTDB_id=332552 ELR50_RS19030 WP_269962067.1 4259134..4260621(-) (comM) [Pseudomonas citronellolis strain WXP-4]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDGLECLGELALSGALRPVQGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGHGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQSGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHHNCALNNQDQTWLETAGERLDLSLRALHRILKVARTLADLEGAERI
ARSHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=332552 ELR50_RS19030 WP_269962067.1 4259134..4260621(-) (comM) [Pseudomonas citronellolis strain WXP-4]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGTGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAACTCCGGCTTCGAATTCCCCGCCCGACGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGGCCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCCGCCCTGGCGGCGCGCGCCGCCGGCC
GCGCCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCAAGCCTGGCCAGTGGCCTGACCGTCTACGCCGTCGGCCACCTG
CTGGAACTGGCCGCGCATCTGACCGGCCAGACGCCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCGCC
CTACCCCGACCTCGCCGAGGTCCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TGCTGCTGAGCGGCCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGCTGCTGCCGCCGCTGAGCGAA
GACGAGGCGCTGCAGGTGGCGGCCATCCACTCCGTGTCCGGGCACGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCGCACCACAGCGCCTCGGCTGCCGCGCTGGTGGGCGGTGGCAGCCGGCCGCAACCCGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTATTTCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTCCTGGAAGTGCTTCGCGAGCCCCTGGAAGGG
GGAGAAATCGTGATCGCCCGGGCCAACGGCCGGGTGCGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGGCCGCGAGACCACGCGCCTCGTCCCTCAGAGTGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAGCGGCAACTGGCGCGGCAGGGTTGCGCGAACGCCGT
TCTCGACCTCAAGTCGATGCACCATAATTGTGCACTGAACAACCAGGACCAGACCTGGCTGGAAACCGCAGGCGAGCGCC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCGAACGCATC
GCCCGCTCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.855

100

0.57
  comM Vibrio campbellii strain DS40M4

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

55.01

100

0.566
  comM Glaesserella parasuis strain SC1401

53.649

100

0.549
  comM Legionella pneumophila str. Paris

49.901

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.471

Multiple sequence alignment