Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELB75_RS06330 Genome accession   NZ_CP034670
Coordinates   1265491..1266987 (-) Length   498 a.a.
NCBI ID   WP_126983202.1    Uniprot ID   A0A3S9SJF4
Organism   Eikenella corrodens strain KCOM 3110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1260491..1271987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS06310 (ELB75_06310) - 1261755..1262585 (-) 831 WP_126983198.1 alpha/beta hydrolase -
  ELB75_RS06315 (ELB75_06315) - 1262778..1263599 (-) 822 WP_126983199.1 undecaprenyl-diphosphate phosphatase -
  ELB75_RS06320 (ELB75_06320) - 1263779..1264447 (-) 669 WP_126983200.1 thiol:disulfide interchange protein DsbA/DsbL -
  ELB75_RS06325 (ELB75_06325) - 1264487..1265278 (-) 792 WP_126983201.1 SPOR domain-containing protein -
  ELB75_RS06330 (ELB75_06330) comM 1265491..1266987 (-) 1497 WP_126983202.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELB75_RS06335 (ELB75_06335) - 1266998..1267264 (-) 267 WP_126983203.1 accessory factor UbiK family protein -
  ELB75_RS06340 (ELB75_06340) - 1267379..1267834 (-) 456 WP_126983204.1 DUF4149 domain-containing protein -
  ELB75_RS06345 (ELB75_06345) ttcA 1267984..1268937 (+) 954 WP_126983205.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  ELB75_RS06350 (ELB75_06350) - 1268927..1269610 (+) 684 WP_126983206.1 CPBP family intramembrane glutamic endopeptidase -
  ELB75_RS06355 (ELB75_06355) hemH 1270003..1271016 (-) 1014 WP_126983207.1 ferrochelatase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53402.37 Da        Isoelectric Point: 7.2816

>NTDB_id=332330 ELB75_RS06330 WP_126983202.1 1265491..1266987(-) (comM) [Eikenella corrodens strain KCOM 3110]
MSLAVVYSRALSGMAAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIAVGILAASGQIAISPEELAQYELAGELALSGLLRPVRGALAMVWQSTQAQRRFILPQESAEQAALIERAEVLAAE
SLVAVAAHLNGIAALPRCQACAEAAEEAPYPDLQDVKGQHTARLALEIAAAGGHSILMSGPPGTGKSMLAQRLPGILPLL
SDDEITETWALRSLLPQQHSFSRRRPFRSPHHSASAAAMVGGGSDPKPGEISLAHNGVLFLDELPEFDRKVLEMLREPLE
NGLIHISRASRQATYPARFQLVAAMNPCPCGYLGHPAKPCRCTPESIARYRGKISGPLLDRIDLIIEVPALSAAELTQAT
PGEPSAAVRERVLAARERQQRRQGKSNALLNVTELDELAAIEPEAKAALSAVLEKLSLSARSYHRILRIARTLADLAGSD
TVNQRHVMQAVSFRRTPS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=332330 ELB75_RS06330 WP_126983202.1 1265491..1266987(-) (comM) [Eikenella corrodens strain KCOM 3110]
ATGAGTTTGGCGGTGGTATACAGCCGGGCGCTCAGCGGCATGGCTGCGCCCTTGGTGGAAGTGGAAGCCCACTTGGCCAA
CGGCCTGCCCGCGTTCAATATCGTCGGCCTACCCGACACTGAAGTGAAAGAAAGCCGCGACCGCGTGCGTGCCGCCATCA
TCCAAAGCGGCTTCGATTTCCCCGCCAAAAAAATCACTGTAAACCTCGCCCCGGCAGATTTACCCAAAGAATCCGGCCGT
TTCGACCTGCCGATTGCCGTGGGCATCCTCGCCGCCTCCGGCCAAATCGCTATTTCGCCCGAAGAATTGGCGCAATACGA
GCTGGCCGGCGAGCTGGCTCTGTCCGGCCTGCTGCGCCCGGTGCGCGGCGCGCTGGCCATGGTGTGGCAGAGCACGCAGG
CGCAGCGCCGTTTTATTTTGCCGCAAGAGAGCGCCGAGCAAGCCGCGCTGATTGAACGCGCCGAGGTATTGGCTGCCGAA
AGCCTGGTGGCCGTGGCCGCCCACCTCAACGGCATCGCCGCCCTGCCCCGTTGCCAAGCCTGTGCCGAAGCGGCCGAAGA
AGCGCCCTATCCCGACCTGCAAGACGTAAAAGGCCAGCACACCGCGCGGCTCGCGCTTGAAATCGCCGCTGCCGGCGGCC
ACAGCATTCTGATGAGTGGCCCGCCCGGCACTGGAAAATCCATGCTGGCGCAACGCCTACCCGGCATCCTGCCGCTGCTC
TCCGACGACGAAATCACCGAAACCTGGGCGCTGCGCTCGCTGCTGCCCCAGCAGCACAGCTTCTCCCGCCGCCGCCCCTT
CCGTTCGCCGCACCACAGCGCCAGCGCCGCTGCCATGGTGGGCGGCGGTTCCGATCCCAAGCCCGGAGAAATTTCCCTGG
CGCACAACGGCGTATTGTTCCTCGACGAATTGCCCGAGTTCGACCGCAAGGTGCTGGAAATGCTGCGCGAACCGCTGGAA
AACGGCCTTATCCACATTTCCCGCGCCAGCCGCCAAGCCACCTATCCCGCCCGCTTCCAACTGGTGGCCGCCATGAATCC
CTGCCCTTGCGGCTACCTCGGCCACCCCGCCAAACCCTGCCGCTGCACACCTGAAAGCATTGCCCGCTATCGCGGCAAAA
TTTCCGGCCCGCTGCTGGACAGGATTGATTTGATTATCGAAGTGCCCGCCCTCTCCGCCGCCGAGCTCACCCAGGCCACA
CCCGGCGAACCCAGCGCCGCCGTGCGGGAACGCGTACTGGCCGCGCGCGAGCGCCAACAGCGGCGGCAAGGCAAAAGCAA
TGCCCTGCTCAACGTAACCGAACTGGACGAGCTGGCCGCCATCGAGCCCGAAGCCAAAGCCGCCCTCTCCGCCGTGCTGG
AAAAACTTTCGCTTTCCGCCCGCAGCTACCACCGCATCCTGCGCATCGCCCGCACCCTGGCCGACTTGGCCGGCAGCGAC
ACCGTAAACCAGCGCCACGTCATGCAGGCCGTGAGCTTCCGCCGTACCCCGTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9SJF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.811

100

0.528
  comM Vibrio campbellii strain DS40M4

52.209

100

0.522
  comM Haemophilus influenzae Rd KW20

50.794

100

0.514
  comM Glaesserella parasuis strain SC1401

50.699

100

0.51
  comM Legionella pneumophila str. Paris

48.33

100

0.494
  comM Legionella pneumophila strain ERS1305867

48.33

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.44

Multiple sequence alignment