Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   SPP_RS06260 Genome accession   NC_012467
Coordinates   1182402..1183106 (-) Length   234 a.a.
NCBI ID   WP_000722076.1    Uniprot ID   Q9S1K0
Organism   Streptococcus pneumoniae P1031     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177402..1188106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS06230 (SPP_1258) - 1177594..1178580 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  SPP_RS06235 (SPP_1259) - 1178870..1179613 (-) 744 WP_000725952.1 potassium channel family protein -
  SPP_RS06240 (SPP_1260) - 1179660..1179914 (-) 255 WP_001823540.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SPP_RS06245 (SPP_1261) relB 1179916..1180158 (-) 243 WP_012677101.1 type II toxin-antitoxin system RelB family antitoxin -
  SPP_RS06250 (SPP_1262) vicX 1180249..1181058 (-) 810 WP_001289496.1 MBL fold metallo-hydrolase Regulator
  SPP_RS06255 (SPP_1263) micB 1181060..1182409 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPP_RS06260 (SPP_1264) micA 1182402..1183106 (-) 705 WP_000722076.1 response regulator YycF Regulator
  SPP_RS06265 (SPP_1265) mutY 1183162..1184337 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  SPP_RS13755 (SPP_1266) - 1184434..1184559 (+) 126 WP_001818232.1 hypothetical protein -
  SPP_RS06270 (SPP_1267) - 1184665..1186335 (-) 1671 WP_000845290.1 formate--tetrahydrofolate ligase -
  SPP_RS06275 (SPP_1268) coaB 1186565..1187254 (+) 690 WP_000699494.1 phosphopantothenate--cysteine ligase -
  SPP_RS06280 (SPP_1269) coaC 1187266..1187817 (+) 552 WP_001284129.1 phosphopantothenoylcysteine decarboxylase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26815.63 Da        Isoelectric Point: 4.7164

>NTDB_id=33231 SPP_RS06260 WP_000722076.1 1182402..1183106(-) (micA) [Streptococcus pneumoniae P1031]
MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA
KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLT
HREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=33231 SPP_RS06260 WP_000722076.1 1182402..1183106(-) (micA) [Streptococcus pneumoniae P1031]
ATGAAAAAAATACTAATTGTAGATGATGAGAAACCAATCTCGGATATTATCAAGTTTAATATGACCAAGGAAGGTTACGA
AGTTGTAACTGCTTTTAATGGTCGTGAAGCGCTAGAGCAATTTGAAGCAGAGCAACCAGATATTATTATTCTGGATTTGA
TGCTTCCAGAAATTGATGGTTTAGAAGTTGCTAAGACCATTCGTAAGACAAGCAGTGTGCCCATTCTTATGCTTTCAGCC
AAAGATAGTGAATTTGATAAGGTTATCGGTTTGGAACTTGGGGCAGATGACTATGTAACGAAACCCTTCTCCAATCGTGA
GTTGCAGGCGCGTGTTAAAGCTCTTCTGCGTCGTTCTCAACCTATGCCAGTAGATGGTCAGGAAGCAGATAGTAAACCTC
AACCTATCCAAATTGGGGATTTAGAAATTGTTCCAGACGCCTACGTGGCTAAAAAATATGGCGAAGAACTAGACTTAACC
CATCGTGAATTTGAGCTTTTGTATCATTTAGCATCGCATACAGGTCAAGTCATCACGCGCGAACACTTGCTTGAGACTGT
CTGGGGTTATGACTATTTTGGTGATGTCCGTACAGTTGATGTGACTGTACGACGTCTGCGTGAGAAGATTGAAGATACGC
CCAGCCGACCAGAGTATATCTTGACACGCCGTGGTGTAGGGTATTACATGAGAAATAATGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1NXS
  PDB 2A9O
  PDB 2A9P

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

100

100

1
  vicR Streptococcus mutans UA159

78.541

99.573

0.782
  covR Streptococcus salivarius strain HSISS4

44.156

98.718

0.436
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.478

98.291

0.427
  scnR Streptococcus mutans UA159

38.197

99.573

0.38

Multiple sequence alignment