Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EJK51_RS06860 Genome accession   NZ_CP034664
Coordinates   1500947..1502461 (-) Length   504 a.a.
NCBI ID   WP_003672554.1    Uniprot ID   -
Organism   Moraxella catarrhalis strain 74P50B1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1495947..1507461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJK51_RS06845 (EJK51_1575) map 1497095..1497883 (-) 789 WP_003657719.1 type I methionyl aminopeptidase -
  EJK51_RS06850 (EJK51_1576) - 1498095..1498430 (-) 336 WP_003663769.1 TIGR01244 family sulfur transferase -
  EJK51_RS06855 (EJK51_1577) - 1498696..1500846 (+) 2151 WP_049166983.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
  EJK51_RS06860 (EJK51_1578) comM 1500947..1502461 (-) 1515 WP_003672554.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EJK51_RS06865 (EJK51_1579) rapA 1502547..1505411 (-) 2865 WP_003672553.1 RNA polymerase-associated protein RapA -
  EJK51_RS06875 (EJK51_1581) - 1505628..1506590 (+) 963 WP_126670949.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54574.67 Da        Isoelectric Point: 8.0189

>NTDB_id=332269 EJK51_RS06860 WP_003672554.1 1500947..1502461(-) (comM) [Moraxella catarrhalis strain 74P50B1]
MSFAKVFTRSVVGLQAPQVFVEVHLSQGLPALTIVGLPEASVRESKDRVRSALINSGYEFPNRRLTINLAPADLPKDGAR
LDLPIAMGILAASGQIDDKVLAQFEFVGELALNGELRPVSGALAIARAIKSSPCDGKPRTLIMPSINADEAVKVGDMTVL
AAENLEAVCRHLDVVSGISQNQEHLLSPVTLPSQPQVMQYAYDLADVKGQHHARRALEIAAAGGHSLLFTGSPGSGKTLM
ASRLPSILPPLTDAETLEVASIYSIAGVNYAFGERPFRAVHHTISATALVGGGSKPKPGEISLAHKGAIFLDEIPEFDRK
TLETLRQPIESKQITISRANAQVSFPADFQLIAAMNPCPCGYYGDTTNRCRCRPEQIKKYQDKLSGPLLDRIDLHITVPA
LPIEDLQNAPKGESSDDVRQRVVAARNMAIARQGKANYELTVNELDQFAILGQKEQQMLKMAQSKLNLSARSYHRILRVA
RTIADLAASEHIKTAHVAEALSYR

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=332269 EJK51_RS06860 WP_003672554.1 1500947..1502461(-) (comM) [Moraxella catarrhalis strain 74P50B1]
ATGTCATTTGCCAAAGTTTTTACACGCTCAGTTGTTGGTTTACAAGCGCCACAAGTATTTGTTGAAGTTCATCTTTCTCA
AGGGTTGCCTGCTCTGACGATTGTCGGGTTGCCTGAAGCTTCGGTACGAGAAAGCAAAGATCGGGTACGCTCAGCACTGA
TTAACTCAGGATACGAATTTCCCAATCGCCGTTTGACAATCAATCTTGCACCTGCCGACTTGCCAAAAGATGGGGCAAGA
CTGGATTTACCAATCGCAATGGGTATTTTGGCAGCCAGTGGTCAGATTGATGATAAGGTTTTAGCACAGTTTGAATTTGT
GGGAGAGCTTGCACTTAATGGAGAGCTTAGACCTGTTTCTGGTGCACTTGCCATCGCTCGTGCAATTAAATCCAGTCCCT
GTGATGGTAAGCCTCGTACGCTGATTATGCCAAGCATTAATGCTGATGAAGCGGTCAAAGTGGGCGATATGACGGTGCTG
GCTGCTGAGAATTTAGAGGCGGTTTGTCGTCATTTGGATGTGGTGAGCGGCATCAGCCAAAATCAAGAACATCTCTTATC
GCCCGTAACTTTGCCAAGTCAGCCTCAAGTGATGCAGTATGCGTATGATTTGGCAGATGTCAAAGGGCAGCATCATGCAC
GCCGAGCACTTGAGATTGCAGCGGCTGGCGGTCATTCGCTATTATTTACAGGATCTCCAGGGTCGGGCAAGACTTTGATG
GCATCGCGTCTGCCCAGTATTTTGCCACCATTGACCGATGCAGAGACTTTAGAGGTGGCAAGTATCTATTCAATTGCAGG
TGTCAATTATGCGTTTGGCGAGCGGCCGTTTCGTGCCGTGCATCATACCATCTCTGCGACTGCTTTGGTTGGTGGCGGCT
CAAAACCCAAACCTGGTGAGATTAGTTTGGCTCATAAAGGAGCGATTTTCCTTGATGAGATTCCAGAATTTGATCGTAAA
ACACTTGAAACATTACGCCAACCCATTGAGTCAAAACAGATTACCATTTCTCGTGCAAATGCTCAAGTGTCATTTCCTGC
TGATTTTCAGCTGATTGCCGCCATGAATCCTTGCCCTTGTGGGTATTATGGCGATACCACAAACCGTTGCCGCTGTCGAC
CTGAGCAAATTAAAAAATATCAAGACAAGCTGTCAGGGCCGTTATTAGACCGCATTGATTTACATATTACTGTGCCTGCT
TTACCCATTGAGGATTTACAAAATGCACCAAAGGGCGAGTCATCAGATGATGTTCGCCAAAGAGTTGTGGCAGCACGCAA
TATGGCGATTGCTCGTCAAGGTAAAGCCAATTATGAGCTGACGGTCAATGAACTTGATCAATTTGCCATATTGGGTCAAA
AAGAACAGCAAATGCTCAAAATGGCTCAATCAAAGCTTAATTTGTCTGCTCGCAGTTACCACCGTATTTTACGCGTAGCA
CGCACCATTGCAGATTTGGCCGCCAGTGAGCACATCAAAACAGCACATGTGGCAGAAGCTTTAAGCTATCGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.758

100

0.526
  comM Glaesserella parasuis strain SC1401

51.373

100

0.52
  comM Legionella pneumophila str. Paris

51.076

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.076

100

0.518
  comM Vibrio cholerae strain A1552

50.787

100

0.512
  comM Vibrio campbellii strain DS40M4

49.803

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.553

100

0.454

Multiple sequence alignment