Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EKO29_RS19690 Genome accession   NZ_CP034660
Coordinates   4590194..4591711 (+) Length   505 a.a.
NCBI ID   WP_126670458.1    Uniprot ID   A0A3S9QAL7
Organism   Colwellia sp. Arc7-635     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4585194..4596711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKO29_RS19675 (EKO29_19675) - 4586735..4587661 (-) 927 WP_126670455.1 branched-chain amino acid transaminase -
  EKO29_RS19680 (EKO29_19680) ilvM 4587766..4588023 (-) 258 WP_126670456.1 acetolactate synthase 2 small subunit -
  EKO29_RS19685 (EKO29_19685) ilvG 4588023..4589687 (-) 1665 WP_126670457.1 acetolactate synthase 2 catalytic subunit -
  EKO29_RS19690 (EKO29_19690) comM 4590194..4591711 (+) 1518 WP_126670458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EKO29_RS19695 (EKO29_19695) ilvY 4591728..4592603 (-) 876 WP_126670459.1 HTH-type transcriptional activator IlvY -
  EKO29_RS19700 (EKO29_19700) ilvC 4592776..4594260 (+) 1485 WP_126670460.1 ketol-acid reductoisomerase -
  EKO29_RS19705 (EKO29_19705) - 4594375..4594692 (+) 318 WP_126670461.1 pyrimidine/purine nucleoside phosphorylase -
  EKO29_RS19710 (EKO29_19710) - 4594789..4596564 (-) 1776 WP_206512353.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55426.76 Da        Isoelectric Point: 7.2106

>NTDB_id=332213 EKO29_RS19690 WP_126670458.1 4590194..4591711(+) (comM) [Colwellia sp. Arc7-635]
MALACVFSRARVGLESPLVTVEVHLANGLPAFNIVGLPETSVREAKDRVRSAIINCGYEFPAKRITVNLAPADLPKEGGR
FDLPIAIGILVAAAQLPETDLSQYEFAGELALSGELRAIIGEIPMAMACQQSGRTLIIPSDNAEQASWVPQVKILSLSHL
SQLFPHFLRQKSLPLIATKTIQEYETKSEHDIADVVGQPLAKRALEIAASGGHNLLFIGPPGTGKTMLASRLPGILPPMT
EQEALSSAAIQSICHKDINPESWLTRPFRAPHHTASSAALVGGGSHPQPGEISLAHNGVLFLDELPEFERKVLDVLREPM
ESGEVTISRALLKQTFPAQFQLVAAMNPSPTGFYNDKRSTPEQVLRYLNRLSGPFLDRIDIQIEVTRLPRGMWANDTGKG
ESSRTIQKRVSICHQRQISRQGKANAQLGSAEVRSFCQLSADDNEFLELAIEKLNLSTRAHHKILKIARTLADMEAVEHI
ERKHLIEALSYRAMDRILRHLTDAI

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=332213 EKO29_RS19690 WP_126670458.1 4590194..4591711(+) (comM) [Colwellia sp. Arc7-635]
ATGGCCTTAGCCTGTGTTTTCAGCCGAGCTCGTGTCGGGCTCGAATCCCCGTTAGTGACAGTAGAAGTGCATTTAGCCAA
TGGCTTACCCGCATTTAATATTGTTGGCTTACCTGAAACTTCGGTTCGAGAAGCAAAAGATCGTGTGCGGAGCGCAATTA
TCAATTGCGGTTACGAATTCCCAGCCAAACGTATCACTGTAAATTTAGCACCAGCAGATTTACCGAAAGAAGGCGGTCGC
TTCGATCTGCCCATCGCTATCGGCATTCTTGTCGCCGCGGCACAACTACCAGAAACGGATTTAAGCCAATATGAATTTGC
CGGAGAGCTTGCTTTATCAGGCGAGTTACGAGCAATTATTGGCGAAATCCCCATGGCTATGGCTTGTCAACAAAGTGGCC
GTACATTGATTATTCCAAGTGACAACGCCGAACAAGCAAGTTGGGTACCGCAAGTAAAAATATTGAGTTTGTCTCATTTA
AGTCAATTATTTCCCCATTTTTTAAGGCAAAAAAGTTTACCGCTTATTGCCACCAAAACCATACAGGAGTACGAAACCAA
AAGTGAGCACGATATTGCCGATGTCGTTGGACAGCCGTTAGCGAAAAGAGCATTAGAAATTGCCGCTAGCGGTGGCCATA
ATCTTTTATTTATTGGCCCGCCAGGCACAGGGAAAACTATGCTCGCCAGTCGACTACCCGGTATTTTACCGCCCATGACC
GAGCAAGAAGCGTTATCAAGTGCTGCAATTCAGTCTATTTGCCATAAAGATATCAACCCTGAATCATGGCTAACAAGACC
TTTTCGTGCTCCACATCATACCGCATCATCGGCAGCGCTAGTCGGTGGCGGTAGTCATCCGCAACCCGGTGAAATTTCAT
TGGCCCATAACGGCGTACTTTTTCTTGATGAATTACCAGAGTTTGAACGTAAAGTGCTCGACGTACTACGTGAACCCATG
GAATCTGGTGAGGTGACGATTTCGCGTGCTCTGCTCAAACAAACATTCCCTGCACAATTTCAACTTGTCGCTGCCATGAA
CCCCAGCCCAACAGGGTTTTACAATGACAAACGTAGTACACCAGAGCAAGTATTACGTTATCTTAACCGTCTTTCCGGGC
CTTTTCTTGATCGTATTGATATTCAAATTGAAGTAACACGATTGCCAAGAGGTATGTGGGCTAATGACACCGGCAAAGGG
GAGTCTAGCCGTACCATTCAAAAACGGGTTAGTATTTGCCACCAAAGGCAAATATCACGTCAAGGTAAAGCGAATGCTCA
GCTGGGTAGTGCTGAAGTTAGAAGCTTCTGCCAACTGTCAGCTGATGATAATGAATTTTTAGAACTCGCGATTGAAAAGC
TTAATTTATCGACCAGAGCACATCATAAAATACTTAAAATAGCCAGAACACTTGCTGACATGGAGGCCGTTGAGCATATT
GAGCGTAAGCATTTAATCGAGGCTTTATCCTATCGAGCCATGGATAGAATATTACGCCATTTGACTGACGCGATATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9QAL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.582

100

0.57
  comM Vibrio cholerae strain A1552

56.04

100

0.56
  comM Vibrio campbellii strain DS40M4

55.952

99.802

0.558
  comM Glaesserella parasuis strain SC1401

54.743

100

0.549
  comM Legionella pneumophila str. Paris

47.6

99.01

0.471
  comM Legionella pneumophila strain ERS1305867

47.6

99.01

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.459

Multiple sequence alignment