Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NX80_RS04220 Genome accession   NZ_CP034653
Coordinates   942488..943942 (-) Length   484 a.a.
NCBI ID   WP_047699622.1    Uniprot ID   -
Organism   Xanthomonas vasicola pv. arecae strain NCPPB 2649     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 937488..948942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX80_RS04200 (NX80_004200) pilC 937677..938933 (-) 1257 WP_026113135.1 type II secretion system F family protein Machinery gene
  NX80_RS04205 (NX80_004205) pilA/pilAI 939297..939713 (+) 417 WP_010375211.1 pilin Machinery gene
  NX80_RS04210 (NX80_004210) - 939720..940220 (+) 501 WP_322788741.1 pilin -
  NX80_RS04215 (NX80_004215) pilB 940285..942018 (+) 1734 WP_047699621.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NX80_RS04220 (NX80_004220) pilR 942488..943942 (-) 1455 WP_047699622.1 sigma-54 dependent transcriptional regulator Regulator
  NX80_RS04225 (NX80_004225) - 944207..945820 (-) 1614 WP_017117852.1 HAMP domain-containing sensor histidine kinase -
  NX80_RS04230 (NX80_004230) sucC 946053..947222 (+) 1170 WP_047699624.1 ADP-forming succinate--CoA ligase subunit beta -
  NX80_RS04235 (NX80_004235) sucD 947247..948122 (+) 876 WP_010366205.1 succinate--CoA ligase subunit alpha -
  NX80_RS04240 (NX80_004240) - 948225..948635 (+) 411 WP_047699626.1 DNA-binding protein -
  NX80_RS04245 (NX80_004245) - 948639..948941 (+) 303 WP_039440773.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52529.27 Da        Isoelectric Point: 6.9344

>NTDB_id=332127 NX80_RS04220 WP_047699622.1 942488..943942(-) (pilR) [Xanthomonas vasicola pv. arecae strain NCPPB 2649]
MGRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGAASESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAN
DLRLPAHGGHRLTATPGSAAVEPREAVLDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=332127 NX80_RS04220 WP_047699622.1 942488..943942(-) (pilR) [Xanthomonas vasicola pv. arecae strain NCPPB 2649]
TTGGGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCTTGGGCCGCATGGGGCTGCGCATCAGCACCG
CAGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAATGGCATCGAACTGGTCACCGACATCGCCAGGCGGTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGTGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCCCCACCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACGATCGGCAAGGTCGCGCGCAGCCAGGCACCGGTTTACAT
CGTCGGCGAATCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TCCCGGTCAACTGCGGCGCCATTCCTGCCGAGCTGATGGAGAGCGAATTTTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCACACGGCGGCACGTTGTTTCTGGACGAAGTAGCGGAATTACCGCT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCGCCAGTGAATCGCTGGTGG
ATGTGCGCATTCTCTCGGCCACACACAAGGACCTGGGCGACTTAGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTACCGCCGCTGCGCGAACGCGGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCGATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCGCTGGCCGAGGACGACCAGATCAGCGCCAAC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCACCGCCACACCCGGCAGCGCTGCCGTCGAACCGCGCGAAGCTGT
CCTCGACATCGACCCCGCCTCGGCCGCCCTCCCCTCTTACATCGAGCAACTGGAACGCGCTGCAATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACCTTTCGGGCGCTGCGTTACAAGTTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

95.661

0.607
  pilR Acinetobacter baumannii strain A118

48.707

95.868

0.467

Multiple sequence alignment