Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPJ_RS11055 Genome accession   NC_012466
Coordinates   2087086..2087748 (-) Length   220 a.a.
NCBI ID   WP_000649970.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2082086..2092748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS11030 (SPJ_2228) - 2082236..2082502 (-) 267 WP_001278167.1 Veg family protein -
  SPJ_RS11035 (SPJ_2229) dnaB 2082504..2083856 (-) 1353 WP_000852486.1 replicative DNA helicase -
  SPJ_RS11040 (SPJ_2230) rplI 2083900..2084352 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  SPJ_RS11045 (SPJ_2231) - 2084349..2086322 (-) 1974 WP_000715111.1 DHH family phosphoesterase -
  SPJ_RS11050 (SPJ_2232) raiA 2086458..2087006 (-) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  SPJ_RS11055 (SPJ_2233) comFC/cflB 2087086..2087748 (-) 663 WP_000649970.1 ComF family protein Machinery gene
  SPJ_RS11060 (SPJ_2234) comFA/cflA 2087745..2089043 (-) 1299 WP_000867611.1 DEAD/DEAH box helicase Machinery gene
  SPJ_RS11065 (SPJ_2235) - 2089099..2089734 (+) 636 WP_000395747.1 YigZ family protein -
  SPJ_RS11070 (SPJ_2236) cysK 2090019..2090939 (+) 921 WP_000029871.1 cysteine synthase A -
  SPJ_RS11075 (SPJ_2237) - 2091178..2091543 (-) 366 Protein_2085 IS66 family transposase -
  SPJ_RS11080 - 2091525..2091812 (+) 288 Protein_2086 transposase -
  SPJ_RS11085 (SPJ_2239) tnpB 2091967..2092221 (-) 255 WP_078373100.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25141.96 Da        Isoelectric Point: 6.8148

>NTDB_id=33196 SPJ_RS11055 WP_000649970.1 2087086..2087748(-) (comFC/cflB) [Streptococcus pneumoniae JJA]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREEGASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=33196 SPJ_RS11055 WP_000649970.1 2087086..2087748(-) (comFC/cflB) [Streptococcus pneumoniae JJA]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGGGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae Rx1

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae D39

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae R6

99.091

100

0.991
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909

Multiple sequence alignment