Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FQR64_RS20040 Genome accession   NZ_CP042585
Coordinates   4047518..4047994 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain LD91-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4042518..4052994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQR64_RS19995 (FQR64_20000) - 4042658..4042762 (-) 105 Protein_3828 HNH endonuclease -
  FQR64_RS20000 (FQR64_20005) - 4042862..4043734 (+) 873 WP_000168567.1 phosphorothioated DNA-binding restriction endonuclease -
  FQR64_RS20005 (FQR64_20010) - 4043845..4044843 (-) 999 WP_001240355.1 membrane protein -
  FQR64_RS26380 (FQR64_20015) - 4045281..4045409 (-) 129 Protein_3831 transcriptional regulator -
  FQR64_RS25695 - 4045385..4045534 (-) 150 Protein_3832 hypothetical protein -
  FQR64_RS20015 (FQR64_20020) - 4045619..4045816 (-) 198 WP_024192776.1 DUF957 domain-containing protein -
  FQR64_RS20020 (FQR64_20025) - 4045828..4046319 (-) 492 WP_001598218.1 DUF5983 family protein -
  FQR64_RS20025 (FQR64_20030) - 4046316..4046690 (-) 375 WP_001598217.1 TA system toxin CbtA family protein -
  FQR64_RS20030 (FQR64_20035) - 4046780..4047148 (-) 369 WP_001598216.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FQR64_RS20035 (FQR64_20040) yeeT 4047228..4047449 (-) 222 WP_146881475.1 DUF987 domain-containing protein -
  FQR64_RS20040 (FQR64_20045) radC 4047518..4047994 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  FQR64_RS20045 (FQR64_20050) - 4048009..4048494 (-) 486 WP_146881476.1 antirestriction protein -
  FQR64_RS20050 (FQR64_20055) - 4048587..4049405 (-) 819 WP_146881477.1 DUF932 domain-containing protein -
  FQR64_RS20060 (FQR64_20065) - 4049744..4052590 (-) 2847 WP_146881478.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=331784 FQR64_RS20040 WP_001186725.1 4047518..4047994(-) (radC) [Escherichia coli strain LD91-1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=331784 FQR64_RS20040 WP_001186725.1 4047518..4047994(-) (radC) [Escherichia coli strain LD91-1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGTCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGACATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment