Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EJN92_RS07780 Genome accession   NZ_CP034464
Coordinates   1800311..1801837 (-) Length   508 a.a.
NCBI ID   WP_126127293.1    Uniprot ID   A0A3Q9BQ61
Organism   Undibacterium parvum strain DSM 23061     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1795311..1806837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN92_RS07765 (EJN92_07765) - 1796415..1798091 (-) 1677 WP_126127290.1 methyl-accepting chemotaxis protein -
  EJN92_RS07770 (EJN92_07770) - 1798178..1798588 (-) 411 WP_126127291.1 hypothetical protein -
  EJN92_RS07775 (EJN92_07775) - 1798599..1799861 (-) 1263 WP_126127292.1 hypothetical protein -
  EJN92_RS07780 (EJN92_07780) comM 1800311..1801837 (-) 1527 WP_126127293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EJN92_RS07785 (EJN92_07785) - 1801860..1802090 (-) 231 WP_126127294.1 accessory factor UbiK family protein -
  EJN92_RS07790 (EJN92_07790) - 1802434..1803171 (+) 738 WP_126127295.1 TorF family putative porin -
  EJN92_RS07795 (EJN92_07795) - 1803186..1803524 (+) 339 WP_126127296.1 P-II family nitrogen regulator -
  EJN92_RS07800 (EJN92_07800) - 1803544..1805100 (+) 1557 WP_126127297.1 ammonium transporter -
  EJN92_RS07805 (EJN92_07805) - 1805540..1806460 (+) 921 WP_126127298.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54673.65 Da        Isoelectric Point: 8.1318

>NTDB_id=331485 EJN92_RS07780 WP_126127293.1 1800311..1801837(-) (comM) [Undibacterium parvum strain DSM 23061]
MALAVLKSRALSGMDAPEVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFDFPAQRITVNLAPADLPKESGR
FDLPIALGILAASGQIPADCLDQYEFAGELSLSGELRPVRGALAMTFAICKGAENSGQTARAFILPRASAAEAALVAEAL
IYPADSLLQVCAHFAASDPETRLSRHQLSHVAVRQSYPDFSDVKGQAQAKRALEVAAAGGHSLILVGPPGTGKSMLAARF
PGILPSMTDQEALESAAVQSLSGGFSIDKWKLRPYRAPHHTASGVALVGGGGTPRPGEISLAHRGVLFLDELPEFDRKVL
EVLREPLESGHITISRAAKQADFPARFQLIAAMNPCPCGYLGHSNGKCHCTPDMVARYQNRISGPLLDRIDMQIHVGALP
HADLLKLADGETSSRIQLRVEQAFARQLARQGKANNLLSTKELDRYCQPDAAGEQLLRTAMQKLNWSARAYHRVLKVARS
IADLADMPQINQSHVAEAIQYRRALLGQ

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=331485 EJN92_RS07780 WP_126127293.1 1800311..1801837(-) (comM) [Undibacterium parvum strain DSM 23061]
ATGGCACTCGCCGTACTCAAAAGCCGCGCCCTCAGTGGTATGGACGCCCCTGAAGTCACGGTAGAAGTGCATCTGGCCAA
TGGCTTACCCAGTTTTACTATCGTTGGTTTGCCCGAGACTGAAGTCAAAGAATCTAAAGACCGGGTGAGGGCGGCCTTAC
AAAATGCGCGCTTCGATTTTCCCGCGCAACGCATCACCGTCAACTTAGCGCCGGCCGATTTACCGAAAGAATCGGGGCGC
TTTGATTTACCTATTGCGCTAGGGATTTTGGCGGCATCTGGGCAAATCCCCGCTGACTGTTTAGATCAATACGAATTTGC
CGGTGAGTTATCTTTATCGGGCGAATTACGGCCGGTGCGCGGTGCGCTGGCGATGACTTTTGCAATTTGCAAAGGCGCGG
AAAATAGCGGCCAGACAGCACGGGCATTTATTTTACCCAGAGCTAGCGCGGCTGAGGCAGCGCTGGTCGCGGAGGCGCTT
ATTTATCCCGCCGATTCACTGCTGCAAGTTTGCGCCCACTTCGCCGCTAGCGATCCAGAAACAAGGCTGAGCCGGCATCA
GCTGAGTCATGTCGCAGTTCGCCAGAGCTATCCCGATTTTTCTGACGTGAAGGGGCAGGCACAAGCAAAGCGCGCGCTGG
AAGTGGCAGCGGCAGGTGGTCATAGTCTGATTTTAGTCGGACCGCCAGGCACCGGGAAATCCATGCTGGCAGCGCGCTTC
CCCGGAATTTTGCCCAGCATGACGGATCAGGAAGCCCTGGAATCAGCGGCCGTGCAATCTCTGAGTGGCGGTTTTTCTAT
CGATAAATGGAAGCTTAGACCCTACCGCGCGCCGCACCATACTGCCTCCGGAGTTGCTTTAGTTGGTGGTGGTGGCACGC
CACGTCCTGGTGAAATTTCACTGGCGCACCGGGGCGTATTATTTCTCGATGAACTACCCGAGTTCGATCGCAAGGTGCTG
GAAGTCTTGCGTGAACCTTTAGAGTCTGGCCACATCACGATTTCACGTGCGGCTAAACAAGCCGATTTTCCGGCTAGATT
TCAACTGATAGCTGCCATGAATCCCTGCCCTTGTGGCTATCTCGGTCACAGCAATGGTAAATGTCACTGCACACCGGACA
TGGTGGCGCGCTACCAAAATAGAATTTCCGGACCCTTGTTAGACCGCATCGACATGCAAATCCATGTCGGTGCTTTGCCG
CATGCCGATTTGCTCAAGCTAGCCGATGGCGAAACCAGTAGTCGCATACAGCTCAGGGTGGAGCAAGCCTTTGCGCGTCA
ATTAGCGCGTCAGGGTAAAGCCAATAATCTGCTCAGCACCAAAGAATTAGACCGCTATTGCCAGCCCGACGCGGCTGGCG
AGCAATTATTGCGCACCGCCATGCAGAAATTGAATTGGTCAGCGCGCGCCTATCATAGAGTTTTAAAAGTGGCGCGCAGC
ATTGCGGATCTGGCAGACATGCCACAAATCAATCAAAGCCATGTCGCCGAGGCAATCCAGTATAGACGCGCCTTATTGGG
GCAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9BQ61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.953

99.606

0.537
  comM Glaesserella parasuis strain SC1401

52.549

100

0.528
  comM Vibrio campbellii strain DS40M4

53.069

99.409

0.528
  comM Haemophilus influenzae Rd KW20

52.559

100

0.526
  comM Legionella pneumophila str. Paris

50

100

0.508
  comM Legionella pneumophila strain ERS1305867

50

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.507

98.622

0.459

Multiple sequence alignment