Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EJF26_RS08905 Genome accession   NZ_CP034442
Coordinates   1740920..1742881 (+) Length   653 a.a.
NCBI ID   WP_025168952.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735920..1747881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08895 - 1737016..1738626 (+) 1611 WP_025168953.1 alpha-glucosidase -
  EJF26_RS08900 amiA 1738806..1740773 (+) 1968 WP_000837389.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS08905 amiA3 1740920..1742881 (+) 1962 WP_025168952.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS08910 cps4A 1743070..1744515 (+) 1446 WP_000166970.1 capsular polysaccharide biosynthesis protein Cps4A -
  EJF26_RS08915 cps4B 1744517..1745248 (+) 732 WP_000565365.1 capsular polysaccharide biosynthesis protein Cps4B -
  EJF26_RS08920 cpsC 1745257..1745949 (+) 693 WP_000664157.1 capsular polysaccharide biosynthesis protein CpsC -
  EJF26_RS08925 - 1745959..1746633 (+) 675 WP_001142538.1 tyrosine-protein kinase -
  EJF26_RS08930 - 1747002..1747601 (+) 600 WP_000285943.1 sugar transferase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73073.35 Da        Isoelectric Point: 4.8306

>NTDB_id=331396 EJF26_RS08905 WP_025168952.1 1740920..1742881(+) (amiA3) [Streptococcus oralis subsp. dentisani strain F0392]
MMKMKKRLIGTGLVLATGIMLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYTDNTAVITNLVDGLLENDSYGNLTPALA
EDWSVSADGLTYTYKLRRDAKWYTADGEEYAPVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDGILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTSD
QQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAEDGFYLKIFGLDAKEDQGLIKSLGLDTYTKLLKEADAENQDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKA
IEKSQKEFENHIK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=331396 EJF26_RS08905 WP_025168952.1 1740920..1742881(+) (amiA3) [Streptococcus oralis subsp. dentisani strain F0392]
ATGATGAAAATGAAAAAAAGACTTATCGGAACAGGTCTTGTCTTAGCGACAGGGATTATGCTCTCTGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCGACAACTTTTAACTATCTTCTAGATTATTATACGG
ATAACACTGCCGTTATTACCAATCTAGTAGATGGTTTGCTGGAAAATGATAGCTATGGGAATCTAACGCCAGCTCTAGCT
GAAGATTGGTCTGTTTCAGCAGATGGTTTGACCTATACCTACAAACTCAGAAGAGATGCCAAGTGGTACACAGCTGATGG
AGAAGAGTATGCTCCAGTCAAAGCCCAAGACTTTGTTACTGGGATCAAGTATGCTGCGGACAACAAGGGGCAAGCCATGG
ATCTCATTCAAAATTCTATCAAGGGATTGAATGACTATGTGACGGGTGTGACTAATGACTTTTCGACTGTTGGTGTCAAA
GCATTGGATGATTACACAGTCGAGTACACTTTAACTCGACCAGAGCCGTACTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAATTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACGGTATCCTTTATAATG
GCCCATATTTGTTAAAAGATTTTACATCAAAATCGTCAATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGGTCAGATCAGGAGATGACGATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCGGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GCTTACAAGATAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAGACCTATAACCATACTGCAAAAACATCAGAT
CAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTGGTTCCCCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACGGCTTCTAAGCTTGTGAACTACGGGACTGAGTGGTCAGGCATCAATTTGGCG
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCCAAAAAGGAATTGGAAGCCCAAGG
GGTGACCTTCCCGATTCATTTGGATGTCCCAGTTGATCAAACCAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCGACAGATGACTTTGGAAATGTC
GCATTTCTAGCACCCAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAAGATCCATC
AACTTATCTAGATCCATTCAATGCAGAAGATGGCTTCTATCTCAAGATTTTCGGTTTAGATGCTAAGGAAGATCAAGGAC
TGATCAAGAGTCTAGGATTAGATACCTATACAAAACTTCTAAAAGAAGCAGATGCTGAGAATCAAGATGTCGCTAAGCGT
TATGAAAAATATGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCGATGTCAAATGGTGGTACAGC
CTCTGTAACTAAAGTAACTCCGTTTACACGTGCCTACTCTCTAGTGGGAATCAAGGGTGACGGAAATAACTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGACGAGGCCAAGGCTAAGTGGGAAGAAGAAAGTAAAAAGGCT
ATCGAAAAGAGCCAAAAAGAATTTGAAAATCATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.135

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

50.983

100

0.516
  amiA Streptococcus salivarius strain HSISS4

50.455

100

0.51

Multiple sequence alignment