Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EJF26_RS08900 Genome accession   NZ_CP034442
Coordinates   1738806..1740773 (+) Length   655 a.a.
NCBI ID   WP_000837389.1    Uniprot ID   F9P1X3
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733806..1745773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08885 - 1734215..1735246 (+) 1032 WP_001007869.1 sensor histidine kinase KdpD -
  EJF26_RS08890 - 1735379..1736863 (-) 1485 WP_000743567.1 DUF1846 domain-containing protein -
  EJF26_RS08895 - 1737016..1738626 (+) 1611 WP_025168953.1 alpha-glucosidase -
  EJF26_RS08900 amiA 1738806..1740773 (+) 1968 WP_000837389.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS08905 amiA3 1740920..1742881 (+) 1962 WP_025168952.1 peptide ABC transporter substrate-binding protein Regulator
  EJF26_RS08910 cps4A 1743070..1744515 (+) 1446 WP_000166970.1 capsular polysaccharide biosynthesis protein Cps4A -
  EJF26_RS08915 cps4B 1744517..1745248 (+) 732 WP_000565365.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72414.05 Da        Isoelectric Point: 5.2154

>NTDB_id=331395 EJF26_RS08900 WP_000837389.1 1738806..1740773(+) (amiA) [Streptococcus oralis subsp. dentisani strain F0392]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAIDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLLQDSIKGLAAYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSSILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKTELQSKGVTFPIRLDVPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKM
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFSKAYSQVGIKGDPFVFKGLELQKDVVTTKEYEEALKKWQKEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=331395 EJF26_RS08900 WP_000837389.1 1738806..1740773(+) (amiA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTCTTGAGTGCAGCTCTTCTGTTAACTGCTTGTGGGCAAAGCGA
AAAGAAGGCTGATGCTCCCAAGACATTTTCTTATGTCTATGCAATAGATCCATCATCTTTGGACTACAGTGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCCAACGTTGTCGATGGCCTCTTGGAAAACGATAAATACGGGAACTTGATTCCGTCG
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGCTTGACTTATACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGAGGGAGAAGAGTATGCTGAAGTCAAGGCTCAGGACTTTGTTACTGGTCTGAAACACGCAGCTGATGGTAAATCAGACG
GCCTCTCTCTCCTTCAAGACTCTATCAAAGGTTTGGCTGCCTACATTAGTGGTGAAAGCAATGACTTTTCTACTGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATATACGCTCAACAAACCAGAAAGTTTCTGGAATTCTAAAGTTACAACTGC
AACCATGCTTCCAGTTAATGAAGAGTTTTTGAATTCTAAAGGGAGCGACTACGGTGCGCCAACACCATCAAGCATCCTTT
ATAACGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATCGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTTAAGATTGACAACATCAAACTAACTTTCTATGATGGTTCCGACCAAGAATCTTTGATTCGCAGCTTTACACA
AGGTGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAAAAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAGTCTTACAATAAAACGGCCAAAACG
GACGAGGCTCAAAAAACTTCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCACTGAACTTTGCCCTTGACCG
TCACTCTTACACTGCTCAGTTGAATGGTGAAGAAGGTGCGGACAAGATTATCCGTAATAGCCTAGTACCTCATGACTACG
TTCAAGTAGGTGAAAAGACATTTGGAGAGTTGGCTCAGGCAGAGCTCGTTTCTTATGGTGACCAGTGGAAAGATGTAGCC
CTTACAGATGGTAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCAAAGGCTAAGACAGAATTGCAGTC
CAAGGGTGTCACCTTCCCAATCCGTTTGGATGTTCCAGTTGAACAAACAGATGTAATCGCCGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACGGAGAATGTCATTGTCGATGTTCTTCAAATGACAGATAATGAAAAAATG
AGCATTACGTCTCAAGCTAAGGTTCCAGCACAAAAAGACTATGACTTGAATGGAACTGGTTGGGGGCCAGACTATCAGGA
CCCAGCTACCTACCTAAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGTATCACCCGTGGAAAAGACC
CAGAAGTGATGGCTCAAGTTGGTCTAGATGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACTAGCGACCTTAAT
AAGCGTTATGAAAAATACGCTAAAGCTCAAGCTTGGGTGTCTGATAGCTCACTCTTAATCCCAGTAGCTTCTTCAGGTGG
TTCTCCAACTGTTAGTCGTACTGTACCATTCTCAAAAGCATACTCACAAGTCGGAATCAAGGGAGACCCGTTTGTATTCA
AAGGTTTGGAGCTGCAAAAGGATGTCGTGACTACAAAAGAATACGAAGAAGCTCTCAAGAAATGGCAGAAAGAAAAGATT
GAAACAAATGCCAAATACCAAAAAGAGCTAGAGAAACACGTCAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P1X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.167

100

0.554
  amiA3 Streptococcus thermophilus LMD-9

54.325

100

0.547
  amiA3 Streptococcus thermophilus LMG 18311

53.869

100

0.542

Multiple sequence alignment