Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EJF26_RS03595 Genome accession   NZ_CP034442
Coordinates   698360..699316 (-) Length   318 a.a.
NCBI ID   WP_000495882.1    Uniprot ID   F9P116
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 693360..704316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS03575 ftsW 693404..694627 (-) 1224 WP_000703365.1 cell division peptidoglycan polymerase FtsW -
  EJF26_RS03580 prsA 694817..695758 (-) 942 WP_000727957.1 peptidylprolyl isomerase PrsA -
  EJF26_RS03585 - 695824..696537 (-) 714 WP_000230398.1 O-methyltransferase -
  EJF26_RS03590 pepF 696539..698341 (-) 1803 WP_000244091.1 oligoendopeptidase F Regulator
  EJF26_RS03595 coiA 698360..699316 (-) 957 WP_000495882.1 competence protein CoiA Machinery gene
  EJF26_RS03600 - 699394..700542 (-) 1149 WP_000202634.1 DUF1887 family protein -
  EJF26_RS03605 tehB 700720..701580 (-) 861 WP_000413063.1 SAM-dependent methyltransferase TehB -
  EJF26_RS03610 smpB 701595..702062 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37918.48 Da        Isoelectric Point: 9.5774

>NTDB_id=331340 EJF26_RS03595 WP_000495882.1 698360..699316(-) (coiA) [Streptococcus oralis subsp. dentisani strain F0392]
MFVARDAKGNLVNALEKDVTKQPYTCPACGGGLRLRQGQSIRTHFAHERLRYCMAIFENESPEHLGNKEALYHWAKKDNQ
VVLEYSLPEIQQIADILVNERLALEVQCSPLSKNLLGNRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
FVWELDLKRKILRLKYLLHQDLRGKLHFQVKEFPFGQGNLLEILRFPYQKQKLPSFTVAQDSTICHYIRQQLYYQTPYWM
KKQEEAYHQGDNLLNRQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYHKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=331340 EJF26_RS03595 WP_000495882.1 698360..699316(-) (coiA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTTTGTAGCCAGAGATGCCAAGGGAAATTTGGTAAATGCCCTCGAAAAAGACGTAACTAAACAGCCCTACACTTGTCC
AGCCTGTGGGGGCGGACTACGATTACGTCAAGGACAGAGTATTCGAACGCATTTTGCCCATGAAAGGTTAAGATATTGTA
TGGCTATTTTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAATCAG
GTGGTCTTAGAATATAGTTTGCCCGAGATCCAGCAGATTGCAGATATTCTCGTAAACGAGAGACTAGCGCTGGAGGTTCA
GTGCAGTCCCTTGTCTAAAAATCTTTTAGGCAATAGAAGTCAAGGATACCGCAGTCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGAGACTTACACAACTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TTTGTTTGGGAACTGGATCTCAAAAGGAAAATTTTGAGACTCAAATATCTTCTGCATCAGGATCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTCCCTTTGGCCAAGGAAATCTCTTGGAAATTCTACGATTCCCCTATCAAAAACAAAAACTGC
CTAGTTTTACGGTTGCCCAAGATTCAACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACACCCTACTGGATG
AAGAAACAGGAGGAGGCCTATCATCAAGGAGACAATCTATTAAACCGTCAACTAGACGACTGGTATCCTCAGGTCAGACC
GATAGAATCAGGAGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCACAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P116

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

68.239

100

0.682
  coiA Streptococcus pneumoniae D39

68.239

100

0.682
  coiA Streptococcus pneumoniae R6

68.239

100

0.682
  coiA Streptococcus mitis NCTC 12261

68.239

100

0.682
  coiA Streptococcus pneumoniae TIGR4

67.925

100

0.679
  coiA Lactococcus lactis subsp. cremoris KW2

42.154

100

0.431

Multiple sequence alignment