Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EJF26_RS03590 Genome accession   NZ_CP034442
Coordinates   696539..698341 (-) Length   600 a.a.
NCBI ID   WP_000244091.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 691539..703341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS03575 ftsW 693404..694627 (-) 1224 WP_000703365.1 cell division peptidoglycan polymerase FtsW -
  EJF26_RS03580 prsA 694817..695758 (-) 942 WP_000727957.1 peptidylprolyl isomerase PrsA -
  EJF26_RS03585 - 695824..696537 (-) 714 WP_000230398.1 O-methyltransferase -
  EJF26_RS03590 pepF 696539..698341 (-) 1803 WP_000244091.1 oligoendopeptidase F Regulator
  EJF26_RS03595 coiA 698360..699316 (-) 957 WP_000495882.1 competence protein CoiA Machinery gene
  EJF26_RS03600 - 699394..700542 (-) 1149 WP_000202634.1 DUF1887 family protein -
  EJF26_RS03605 tehB 700720..701580 (-) 861 WP_000413063.1 SAM-dependent methyltransferase TehB -
  EJF26_RS03610 smpB 701595..702062 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69809.79 Da        Isoelectric Point: 4.5986

>NTDB_id=331339 EJF26_RS03590 WP_000244091.1 696539..698341(-) (pepF) [Streptococcus oralis subsp. dentisani strain F0392]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQIASQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLDLRSKILGISDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAILGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=331339 EJF26_RS03590 WP_000244091.1 696539..698341(-) (pepF) [Streptococcus oralis subsp. dentisani strain F0392]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCAACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAATAGCATCTCAGTATGAGGGACATCTCTTGGACAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCACATATGAAAAATGAC
CAAGATACGCGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTACTTGCTGGAGCA
GGAGAAATCTTCGGCGCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTTCTTGATGA
TGAAGGCAAGGAAGTGCAACTCTCACATGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGCCGTGGTG
CTTATGAAGCCCTTTATGCGACTTACGAGCAATTCCAACACACCTACGCTAAGACTTTGCAGACAAATGTTAAGGTGCAA
AACTACCGCGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCCAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCACTTGCCACTCTTGCATCGTTACCTTGATCTTCGTTCAAAAATCTTAGGTA
TTTCTGATCTCAAGATGTACGATGTCTACACTCCACTGTCTTCAGTAGAATACAGCTTTACTTATGAGGAAGCCTTGAAA
AAGGCAGAAGAAGCCTTGGCGATCTTGGGTGATGACTACTTGAGCCGTGTCAAACGCGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGCTCTGGTGCCTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTCCACGAAACGGGTCACAGTATGCACTCGAGCTATACTCGTGAAACC
CAACCATATGTTTACGGAGATTACTCTATCTTCTTGGCTGAGATTGCCTCAACAACCAACGAAAATATCTTGACAGAGAA
ATTATTGGAGGAAGTAGAAGACGATGCGACTCGCTTTGCTATCCTTAATAACTTTTTGGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAACTATACGCAGACTTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTTTATCAGTATTCGACTGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGATCGTGACCGCTATATCGACTACCTCAAAGCAGGTAAATCAGACTATCCACTC
AATGTTATGAGAAAAGCGGGTGTTGATATGGAAAAAGAAGACTATCTTAACGATGCCTTTGCAGTCTTTGAACGCCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTAGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.953

99.333

0.675

Multiple sequence alignment