Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EI562_RS12005 Genome accession   NZ_CP034336
Coordinates   2380896..2381426 (-) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter asburiae strain CAV1043     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2375896..2386426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EI562_RS11980 (EI562_11980) - 2376485..2377156 (-) 672 WP_023310058.1 glutathione S-transferase family protein -
  EI562_RS11985 (EI562_11985) soxR 2377450..2377908 (-) 459 WP_023310057.1 redox-sensitive transcriptional activator SoxR -
  EI562_RS11990 (EI562_11990) soxS 2378007..2378333 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  EI562_RS11995 (EI562_11995) - 2378340..2379905 (-) 1566 WP_023310056.1 EAL domain-containing protein -
  EI562_RS12000 (EI562_12000) - 2380552..2380833 (+) 282 WP_008503385.1 YjcB family protein -
  EI562_RS12005 (EI562_12005) ssb 2380896..2381426 (-) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EI562_RS12015 (EI562_12015) uvrA 2381677..2384499 (+) 2823 WP_023310054.1 excinuclease ABC subunit UvrA -
  EI562_RS12020 (EI562_12020) - 2384503..2384856 (-) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  EI562_RS12025 (EI562_12025) - 2384859..2385275 (-) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EI562_RS12030 (EI562_12030) aphA 2385389..2386102 (-) 714 WP_023310051.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=330739 EI562_RS12005 WP_023310055.1 2380896..2381426(-) (ssb) [Enterobacter asburiae strain CAV1043]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=330739 EI562_RS12005 WP_023310055.1 2380896..2381426(-) (ssb) [Enterobacter asburiae strain CAV1043]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTAGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGTGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment