Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | D8X56_RS00300 | Genome accession | NZ_CP034314 |
| Coordinates | 39470..40606 (+) | Length | 378 a.a. |
| NCBI ID | WP_125301252.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HP42K | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34470..45606
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8X56_RS00265 (D8X56_00265) | panD | 34918..35271 (+) | 354 | WP_000142250.1 | aspartate 1-decarboxylase | - |
| D8X56_RS00270 (D8X56_00270) | - | 35274..35576 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D8X56_RS00275 (D8X56_00275) | - | 35576..36571 (+) | 996 | WP_125303651.1 | PDZ domain-containing protein | - |
| D8X56_RS00280 (D8X56_00280) | comB6 | 36579..37634 (+) | 1056 | WP_125303649.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D8X56_RS00285 (D8X56_00285) | comB7 | 37650..37763 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D8X56_RS00290 (D8X56_00290) | comB8 | 37760..38503 (+) | 744 | WP_125301248.1 | virB8 family protein | Machinery gene |
| D8X56_RS00295 (D8X56_00295) | comB9 | 38503..39477 (+) | 975 | WP_125301250.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D8X56_RS00300 (D8X56_00300) | comB10 | 39470..40606 (+) | 1137 | WP_125301252.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D8X56_RS00305 (D8X56_00305) | - | 40677..42089 (+) | 1413 | WP_125301254.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| D8X56_RS00310 (D8X56_00310) | gmd | 42133..43278 (+) | 1146 | WP_125301256.1 | GDP-mannose 4,6-dehydratase | - |
| D8X56_RS00315 (D8X56_00315) | - | 43271..44203 (+) | 933 | WP_125301258.1 | GDP-L-fucose synthase | - |
| D8X56_RS08160 | - | 44231..44449 (-) | 219 | Protein_40 | anthranilate synthase component I | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42131.68 Da Isoelectric Point: 9.9021
>NTDB_id=330626 D8X56_RS00300 WP_125301252.1 39470..40606(+) (comB10) [Helicobacter pylori strain HP42K]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRSNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRSNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=330626 D8X56_RS00300 WP_125301252.1 39470..40606(+) (comB10) [Helicobacter pylori strain HP42K]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAATACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGAAAGGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGAGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTCTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAATACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGAAAGGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGAGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTCTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.619 |
100 |
0.976 |