Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D8X56_RS00290 Genome accession   NZ_CP034314
Coordinates   37760..38503 (+) Length   247 a.a.
NCBI ID   WP_125301248.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32760..43503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS00265 (D8X56_00265) panD 34918..35271 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  D8X56_RS00270 (D8X56_00270) - 35274..35576 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D8X56_RS00275 (D8X56_00275) - 35576..36571 (+) 996 WP_125303651.1 PDZ domain-containing protein -
  D8X56_RS00280 (D8X56_00280) comB6 36579..37634 (+) 1056 WP_125303649.1 P-type conjugative transfer protein TrbL Machinery gene
  D8X56_RS00285 (D8X56_00285) comB7 37650..37763 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  D8X56_RS00290 (D8X56_00290) comB8 37760..38503 (+) 744 WP_125301248.1 virB8 family protein Machinery gene
  D8X56_RS00295 (D8X56_00295) comB9 38503..39477 (+) 975 WP_125301250.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D8X56_RS00300 (D8X56_00300) comB10 39470..40606 (+) 1137 WP_125301252.1 DNA type IV secretion system protein ComB10 Machinery gene
  D8X56_RS00305 (D8X56_00305) - 40677..42089 (+) 1413 WP_125301254.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D8X56_RS00310 (D8X56_00310) gmd 42133..43278 (+) 1146 WP_125301256.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28678.93 Da        Isoelectric Point: 8.9546

>NTDB_id=330624 D8X56_RS00290 WP_125301248.1 37760..38503(+) (comB8) [Helicobacter pylori strain HP42K]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=330624 D8X56_RS00290 WP_125301248.1 37760..38503(+) (comB8) [Helicobacter pylori strain HP42K]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATTTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGATATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGCATTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAGCCCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCAAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment